2Q9Q


Conserved Protein Domain Family
GINS_A_psf3

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cd11713: GINS_A_psf3 
Click on image for an interactive view with Cn3D
Alpha-helical domain of GINS complex protein Psf3 (partner of Sld5 3)
Psf3 is a component of GINS, a tetrameric protein complex. Psf3 expression is up regulated in malignant colon cancer and it might be involved in cancer cell proliferation. GINS is a complex of four subunits (Sld5, Psf1, Psf2 and Psf3) that is involved in both initiation and elongation stages of eukaryotic chromosome replication. Besides being essential for the maintenance of genomic integrity, GINS plays a central role in coordinating DNA replication with cell cycle checkpoints and is involved in cell growth. The eukaryotic GINS subunits are homologous and homologs are also found in the archaea; the complex is not found in bacteria. The four subunits of the complex consist of two domains each, termed the alpha-helical (A) and beta-strand (B) domains. The A and B domains of Sld5/Psf1 are permuted with respect to Psf1/Psf3.
Statistics
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PSSM-Id: 212551
Aligned: 96 rows
Threshold Bit Score: 56.5055
Created: 22-Mar-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
tetramer
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:tetramer interface [polypeptide binding site]
Evidence:
  • Comment:GINS tetramer complex resembles a spindle with a visible central hole
  • Comment:Major tetramer bonding are through A-domains of GINS subunits Sld5, Psf1, Psf2 and Psf3
  • Structure:2Q9Q, human GINS heterotetramer interface at 4.0 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                              #  #                       #   #   ##     
2Q9Q_D        87 ILSVELPKI---YQEGWRTVFSADPNVVDLHKMgPHFYGFGSQLLHFDs---pENADISQSLLQTFIGRFRRIMDSSQNa 160 human
Q4MZH7        42 LYKAGLCKIefpSYYKSARALFTEPTATTVGLStPFYFELAYELCQIIpenewPVENLLSMLKEAECKRRNFLIKRSTTv 121 Theileria parva
XP_001609152  72 LYTSGLCKIsfpAYYNNVGALLAEPTATALGLLsPFYFQLGYELCNLLpenewPIDNFHKILKEAECKRRLYLLRRNDTc 151 Babesia bovis T2Bo
XP_002619252  83 FVELLQPEF---VGPRVLNAIRADPTSVDLHTIaSNFYRLAEKWSALF-----NDTELVEVVMAMLKERAVEIDNYASNt 154 Clavispora lusi...
EGV64475      67 IIMLLAPDA---LNNTVQNAIKSDPVSIDLHSIaPNFYILAERWCALF-----TDEELSETLKKLCKERAYEINNFASNt 138 Candida tenuis ...
EIE76212     356 LIAIEIPRT---YGTKVRNMLVASPESVDFRSLgAYFYEFGVKLVDFV-----VDEKLPGILEKAFKQRIKGIMNYSQSs 427 Rhizopus oryzae...
EEE25499     270 KMKIKFPSF---YEIAIIDALIKDPLTVDLAAHcLFYFDLGLHLCSLLppyewPVQHLQETLRNARHRRRVHIITHHKVl 346 Toxoplasma gond...
CCA38473      76 FIELIQPDF---YSSKIINAIKTNALKIDLHQLlPYFYKLSVKWGSMF-----NDTELMAIVQEMFKQRACAINDYSSDn 147 Pichia pastoris...
XP_002808994  83 NSLVKIKFP---EYYDMAGALLSDATAACVGNLtPFYFELGNELCELLpqdewPVEKLEELLLLAETRRRVYLIKHNDQv 159 Plasmodium falc...
XP_001352020  87 KNIIRIKFP---SYYDIIETLKFDPVSVTIGLFnQFYFETAYELCNLLpinewPSTNFYDILRKAEKTRIHFLINNKTKl 163 Plasmodium falc...
Feature 1                     #  # # ###########       
2Q9Q_D       161 yne--dtsaLVARLDEMERGLFQTGQKGLNDFQCWEKG 196 human
Q4MZH7       122 d------gaFLSGLTHEEKKRKSKLSQFSVLNVLSTAN 153 Theileria parva
XP_001609152 152 d------dtFLMGLTFEERKLQSVLMHGDSNALITSVT 183 Babesia bovis T2Bo
XP_002619252 155 snl--vnsnFLYSLDEFERALYRATYESKKQMRTWGNT 190 Clavispora lusitaniae ATCC 42720
EGV64475     139 skq--innnFILSLDEFEKKLYKRTMESNRNLRDWLND 174 Candida tenuis ATCC 10573
EIE76212     428 gst--vgqdFIQKLDETEKDCKLKWDRLHKVVLNSFYT 463 Rhizopus oryzae RA 99-880
EEE25499     347 e------kqFIGRLTFPEVCILKELQKDQAGPRGPFGG 378 Toxoplasma gondii GT1
CCA38473     148 nhlqllnseFGLQLDETERIRVRNMSDRPFLESSPSKM 185 Pichia pastoris CBS 7435
XP_002808994 160 d------qtYLEGMTFMEKKMFNSFSLGSDVDKKRATL 191 Plasmodium falciparum 3D7
XP_001352020 164 n------syFLEGLTNKEKKIYKYFLEGTSKEREKLNK 195 Plasmodium falciparum 3D7

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