2E9X


Conserved Protein Domain Family
GINS_A_psf2

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cd11712: GINS_A_psf2 
Click on image for an interactive view with Cn3D
Alpha-helical domain of GINS complex protein Psf2 (partner of Sld5 2)
Psf2 is a component of GINS tetrameric protein complex and has been found to play important roles in normal eye development in Xenopus laevis. GINS is a complex of four subunits (Sld5, Psf1, Psf2 and Psf3) that is involved in both initiation and elongation stages of eukaryotic chromosome replication. Besides being essential for the maintenance of genomic integrity, GINS plays a central role in coordinating DNA replication with cell cycle checkpoints and is involved in cell growth. The eukaryotic GINS subunits are homologous and homologs are also found in the archaea; the complex is not found in bacteria. The four subunits of the complex consist of two domains each, termed the alpha-helical (A) and beta-strand (B) domains. The A and B domains of Sld5/Psf1 are permuted with respect to Psf1/Psf3.
Statistics
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PSSM-Id: 212550
Aligned: 80 rows
Threshold Bit Score: 68.0199
Created: 22-Mar-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
tetramer
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:tetramer interface [polypeptide binding site]
Evidence:
  • Comment:GINS tetramer complex resembles a spindle with a visible central hole
  • Comment:Major tetramer bonding are through A-domains of GINS subunits Sld5, Psf1, Psf2 and Psf3
  • Structure:2Q9Q, human GINS heterotetramer interface at 4.0 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                               #  #                     
2E9X_B        55 RQKCRLLPPEWm-------dVEKLEKMRDHERKEEt---------FTPmPSPYYMELTKLLLNHAsdn------------ 106 human
XP_001010243  62 SNKCRIVPPDWl-------nEQILTKVFDSEKQNDe---------LQN-LPYQFFEIAHILIKYCces------------ 112 Tetrahymena the...
A0CXB0        61 KNKCRVIPPEWl-------sIERLQQKLDEETINEs--------eLAR-MELYYFEISSILFSYCrdd------------ 112 Paramecium tetr...
Q8SV74        57 SNMCKIRLPSYl-------qLESLKMSMDVEIEKAd---------EYScIHPYFFPLATELLENCyn------------- 107 Encephalitozoon...
Q4MYL8       343 DGFVTVELPQIl-------rKEYLRSLRTLEEKSEp---------LQQlPNDYFFELTHIFTKSKlfkklyipnmrkned 406 Theileria parva
XP_001611160 316 FGFVSVDIPVYl-------tRNSLRELRDREEQGEv---------LEKlPNYYFFEIAHMFTRSNifervnvpn------ 373 Babesia bovis T2Bo
CBY13798      58 RGLVIVHQPKWm-------tEEKLKEWLESENADNtn-------aIAP-LHYHYREISRMLLQNCrdn------------ 110 Oikopleura dioica
CBY09348      59 RNLCIVHQPKWl-------tISELQKWYDAEKAEEq--------nAVNpKNYNYRELSRLLLRHCrdg------------ 111 Oikopleura dioica
XP_001351244 366 EGLATVEFPFWf-------yIDNLKHIYKKEFDDIn--------eLTDlPSPFFFEISSMFLENNcfknstpie------ 424 Plasmodium falc...
XP_955498    302 INLNLIEVLRYgvrstatnsPERGALVIYPSKGHStivltlldyiFIMnSKKLYIPNMKKNEDVYg-------------- 367 Theileria annul...
Feature 1                                 #   #   ##                         #  # # ###########  
2E9X_B       107 -----------ipKADEIRTLVKDMWDTRIAKLRVSADSFVRqqeah--------akldNLTLMEINTSGTFLTQALNHM 167 human
XP_001010243 113 -----------ipNVQKVRSVLDDIENIRETKIDIKMLKIDQntkf---------vrfnNISQYEVNKKRKVLELFMDGL 172 Tetrahymena the...
A0CXB0       113 -----------ikDDDKIKLLLEDIKTRRESKIQKKIEEFIArgsea--------lkinNLNQHERNKIYSNFYGDLKKL 173 Paramecium tetr...
Q8SV74       108 -----------veSIEESKMIVEKIKEIRLAKTLKGIKCLDGkal-----------nmnNITLFEFNEIKELILGSAEVG 165 Encephalitozoon...
Q4MYL8       407 vygyiskisgnshNNCYALGIVEDIRYTRLKKIYNFLENLEMqeki---------ikldNFQFSETHIINQYLSGYCSFD 477 Theileria parva
XP_001611160 374 ----lsnrnhvysYVSKLAGLIEDIKYQRLKKIRQTLEKIPQresv---------isvdNLQYSETFYVNQFLSAYSEVR 440 Babesia bovis T2Bo
CBY13798     111 -----------msDITEIEQLVEDIWNVRISKLKMSCKNVMKtrwqmeipdhggvfkidNFTQMEVNFIRGTFLKGLNLS 179 Oikopleura dioica
CBY09348     112 -----------fkDVDQLDQLIEDLWNIRIAKLRVSCQNVLKtrwqneipehggfykisNFTQMEINFIRQAFLHSLKVS 180 Oikopleura dioica
XP_001351244 425 ----tigqrtpykYILKVAGLIQDIRQKRIYKIMNKIKSCDIfsei---------lminNIQIYETYCVNYLASVFFQKN 491 Plasmodium falc...
XP_955498    368 -------------YISKISGIVEDIRYTRLKKIYSFLENLKMeqki---------ikldHFQFSETYIINQYLSGYCSFD 425 Theileria annul...
Feature 1               
2E9X_B       168 YKLRTNL 174 human
XP_001010243 173 NNIQKVV 179 Tetrahymena thermophila
A0CXB0       174 RQLKLLA 180 Paramecium tetraurelia
Q8SV74       166 RRIEDLA 172 Encephalitozoon cuniculi GB-M1
Q4MYL8       478 DRTKETL 484 Theileria parva
XP_001611160 441 DINACSD 447 Babesia bovis T2Bo
CBY13798     180 FVMSNKI 186 Oikopleura dioica
CBY09348     181 FKISSKI 187 Oikopleura dioica
XP_001351244 492 TSTNSFD 498 Plasmodium falciparum 3D7
XP_955498    426 DKNKKTS 432 Theileria annulata strain Ankara

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