2Q9Q


Conserved Protein Domain Family
GINS_A_psf1

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cd11710: GINS_A_psf1 
Click on image for an interactive view with Cn3D
Alpha-helical domain of GINS complex protein Psf1
Psf1 is a component of the GINS tetrameric protein complex. Psf1 is mainly expressed in highly proliferative tissues, such as blastocysts, adult bone marrow, and testis, in which the stem cell system is active. Loss of Psf1 causes embryonic lethality. GINS is a complex of four subunits (Sld5, Psf1, Psf2 and Psf3) that is involved in both initiation and elongation stages of eukaryotic chromosome replication. Besides being essential for the maintenance of genomic integrity, GINS plays a central role in coordinating DNA replication with cell cycle checkpoints and is involved in cell growth. The eukaryotic GINS subunits are homologous and homologs are also found in the archaea; the complex is not found in bacteria. The four subunits of the complex consist of two domains each, termed the alpha-helical (A) and beta-strand (B) domains. The A and B domains of Sld5/Psf1 are permuted with respect to Psf1/Psf3.
Statistics
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PSSM-Id: 212548
Aligned: 63 rows
Threshold Bit Score: 76.5248
Created: 22-Mar-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
tetramer
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:tetramer interface [polypeptide binding site]
Evidence:
  • Structure:2Q9Q, human GINS heterotetramer interface at 4.0 A
  • Comment:GINS tetramer complex resembles a spindle with a visible central hole
  • Comment:Major tetramer bonding are through A-domains of GINS subunits Sld5, Psf1, Psf2 and Psf3

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                    #  #                                                
2Q9Q_C         3 CEKAMELIRELHRape-gqLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSgg--------rsDLIPTIKFRHCSLLRNR 73  human
Q9P7X6         6 GNRSNKLIRDSKRtqyldyLPPYQADTVNDVVNEIRAADRESLGILQNVTHeasqpfqpqdhpSEAAALLMFHSSSIYNK 85  Schizosaccharom...
Q7SDH9         5 GDLGNKLVQHAKRtqnlshLPPYQTELVRAVAREIRDLDKDVASLLEPFQGsfdp----saeqATACTLLVNHLSMRRNK 80  Neurospora cras...
A0E614         3 IHNRNKLLLDLKTsl---fLPPFNEELYSTCTTDHQKSIKEIQEIYKLRNDpel-------adKIKPIIQLKIKDVERTK 72  Paramecium tetr...
XP_003034407   8 GDLGTQLVMESRRstqtdtLLKYNDSLVRSIIRELRELEKAAISIAENEPMta---------eGPPPALIIYQTAINRNK 78  Schizophyllum c...
CCA69621       9 GDQAMTLVNEARRsnaagtLSKYNDPLVRAVCREMRTLDTDLSRITSEYEIddsq-----vpdGVMAAASFYHVALRRNK 83  Piriformospora ...
XP_002296811   4 GQRGRDLLLDLKRsd---wLPSYDEDAVRATIQESALHHDEIKAVLRAANRasdggaedgpaiGVRPKMLLHDASVKRNK 80  Thalassiosira p...
XP_001028009   3 TIKASKLLKELKGsk---fLPYYNEELIKDLKKDIKGHCDSFIKIISEPEDeidsk--qdkyqKYMTNIKTLQLIIYRYK 77  Tetrahymena the...
EFX02559       3 GDLGNKLVQHAKRtqnlahLPPYQTEIVRAVTREVRDLDKDVAQLLEPFQGs-----------FDPTTEPAKAYKLEELV 71  Grosmannia clav...
CBQ69340       3 GDQALKLVTEAKAcl--nlDNVKPDELIRSLILETKQLHAHLTTLLSTLETqsahls-pvelsGLQSQLLMLHLIVSYNK 79  Sporisorium rei...
Feature 1              #   #   ##                                          #  # # ###########    
2Q9Q_C        74 RCTVAYLYDRLLRIRALRWeygsi--------------------------lpnaLRFHMAAEEMEWFNNYKRSLATYMRS 127 human
Q9P7X6        86 RCLMAYHNLRLQRLRQYCWsggkr--------------------------mescLDTSLSTYERDYLTRYSELLAAYKGA 139 Schizosaccharom...
Q7SDH9        81 RCLLAYHRIRTDKLEELVWngadildlagqttg--------gpkgvtegnegggTTSSLSPQEEDYFRQFGDLLALYKGQ 152 Neurospora cras...
A0E614        73 RVQLAYLMHRINKIQSQYFvdsgq--------------------------lssdHIDQLSKNEKDYYKFFDQLVKKYEND 126 Paramecium tetr...
XP_003034407  79 RCLLAYHMHRTDRLRDMYWaaggalp---------------------hilsnadTRGKLSPHEVDYLKQYNASVMEFRGT 137 Schizophyllum c...
CCA69621      84 RCVLAYQNHRIEKLKELYWgaagslv---------------------hllgdseVRTRLSPHEVDFLRTYNEIVQEFRGD 142 Piriformospora ...
XP_002296811  81 RCLLAYHAYRMDKLRSLRWetsgt--------------------------lppsMKHVLSEAEVDFFHEYDKLASKYTLS 134 Thalassiosira p...
XP_001028009  78 RIILAYLSKRMDIIEQYFWefgqn--------------------------lpkeYKEFLHPDEKQYTENYRSLIVNYSKN 131 Tetrahymena the...
EFX02559      72 WNGSDVVDLSEQQIRDGPSgargsggragsgggaigggetgtgdgysagvsssnGSSSLSPQEEDYVRQYSNLLAAYKGQ 151 Grosmannia clav...
CBQ69340      80 RALLIYHNIRLDLLFSHLSrhsfalsi--------------------lfarhphLRTTLSPAEQDQLKRYSDLMHRTKLQ 139 Sporisorium rei...
Feature 1           
2Q9Q_C       128 LGG 130 human
Q9P7X6       140 WSE 142 Schizosaccharomyces pombe 972h-
Q7SDH9       153 WTD 155 Neurospora crassa OR74A
A0E614       127 IET 129 Paramecium tetraurelia
XP_003034407 138 FSG 140 Schizophyllum commune H4-8
CCA69621     143 FED 145 Piriformospora indica DSM 11827
XP_002296811 135 GSM 137 Thalassiosira pseudonana CCMP1335
XP_001028009 132 MTQ 134 Tetrahymena thermophila
EFX02559     152 WTD 154 Grosmannia clavigera kw1407
CBQ69340     140 YLD 142 Sporisorium reilianum SRZ2

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