3B13,2YIN


Conserved Protein Domain Family
DHR2_DOCK_A

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cd11697: DHR2_DOCK_A 
Click on image for an interactive view with Cn3D
Dock Homology Region 2, a GEF domain, of Class A Dedicator of Cytokinesis proteins
DOCK proteins are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. As GEFs, they activate small GTPases by exchanging bound GDP for free GTP. They are divided into four classes (A-D) based on sequence similarity and domain architecture; class A includes Dock1, 2 and 5. Class A DOCKs are specific GEFs for Rac. Dock1 interacts with the scaffold protein Elmo and the resulting complex functions upstream of Rac in many biological events including phagocytosis of apoptotic cells, cell migration and invasion. Dock2 plays an important role in lymphocyte migration and activation, T-cell differentiation, neutrophil chemotaxis, and type I interferon induction. Dock5 functions upstream of Rac1 to regulate osteoclast function. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate. This alignment model represents the DHR-2 domain of class A DOCKs, which contains the catalytic GEF activity for Rac and/or Cdc42. Class A DOCKs also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus.
Statistics
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PSSM-Id: 212570
Aligned: 14 rows
Threshold Bit Score: 698.695
Created: 20-Mar-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 40 residues -Click on image for an interactive view with Cn3D
Feature 1:Rac binding site [polypeptide binding site]
Evidence:
  • Structure:2YIN: Human Dock2 binds Rac1; contacts at 4A.
  • Structure:3B13: Human Dock2 DHR-2 domain binds Rac1 mutant; contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
3B13_A         27 EMYIRYLYKLRDLHLDcdNYTEAAYTLLLHTWLLKWsdeqcasqvmq-tgqqhpqthrqLKETLYETIIGYFDkgKMWEE 105  human
2YIN_A         32 EMYIRYLYKLRDLHLDcdNYTEAAYTLLLHTWLLKWsdeqcasqvmq-tgqqhpqthrqLKETLYETIIGYFDkgKMWEE 110  human
EFX86015     1224 EMYIRYLNKLCDLHLEcdNFTEAAYTLQLHAQLLRWsdeplptlllt-srhphitshrqLKEALYLDSVDLFDrgKMWEC 1302 common water ...
NP_477144    1258 EMYIRYVNKLCALHMEfeNYTEAAFTLKLHTELLRWtdtelshqlrs-yrhnncrthrqLKEALYFEIMEYFDkgKQWEC 1336 fruit fly
XP_003248245 1222 EMYIRYVNKLCSLHLEcdDFAEAAYTLRLHSELLSWsndplppllrsplryptcdthrqLKEALYHDIIDYFNkgKMWEC 1301 pea aphid
EFA10254     1266 EMYIRYLNKLYDLHLEcdNYTEAAYTIDLHAKLLNWtdedlpqllkt-nrhpkahthrqLKEALYYNIIENYDrgKLWEC 1344 red flour beetle
XP_002608345  802 LFYRIYLYKLCDLHLEcdNYTEAAYTLLLHATLLKWtdeplitthd---kypeaqthrqLKEMLYYDIIEYFDkgKMWEE 878  Florida lancelet
EGI59998     1262 EMYIRYVNKLCELHLEcdNYTEAAYSLKLHSQLLAWsdqplspllis-hryplcqthreLKEALYNDIIDYFDkgRMWEC 1340 Panamanian le...
EFR21674     1322 EMYIRYVDKLYELHMEfdNFTEAAYTLKLHSNELSWdetplslllks-krhilssthrtLKEQLYRSMIDLFDkgKMWEC 1400 Anopheles dar...
Q14185       1214 EMYIRYLYKLCDLHKEcdNYTEAAYTLLLHAKLLKWsedvcvahltq-rdgyqattqgqLKEQLYQEIIHYFDkgKMWEE 1292 human
Feature 1                                                                                # ####   
3B13_A        106 AISLCKELAEQYEMEiFDYELLSQNLIQQAKFYESIMkilrpkPDYFAVGYYGQGFPSFLRNKVFIYRGKEYERREDFQM 185  human
2YIN_A        111 AISLCKELAEQYEMEiFDYELLSQNLIQQAKFYESIMkilrpkPDYFAVGYYGQGFPSFLRNKVFIYRGKEYERREDFQM 190  human
EFX86015     1303 ALSLCKELARQYEEEtFDYGRLGALLNRMATLYDHIIhqvrhePEYFRVAFYGRGFPAFLQNKIFVFRGKEYERLSEFSN 1382 common water ...
NP_477144    1337 AIDMCRVLARQYEEEiFDYLKLAELLNRMALFYEKIIkelrhnSEYFRVCFYGRGFPRFLQNRVYIFRGKEYERHSDFCA 1416 fruit fly
XP_003248245 1302 AVCMCKELVRQCESEtYDYIQLSSLLQRMSNFYDNIMkqlrpePEYFRVAYYGKGFPSFIQNKVFIYRGKEYERLSDFSN 1381 pea aphid
EFA10254     1345 AIKKCQELASQFESEtYDYHRLSQLHKRMSTFYDDIMkkgrakPEYFRVGYFGKGFPQFLQNKVFVYRGKEYERLTEFNT 1424 red flour beetle
XP_002608345  879 GIRLCKELASQYENEtFDFLNLSLILQKQAMFYDNIMktmrpdPEYFRVGYFGQGYPSFLRNKVFIYRGKEYERLGDFTS 958  Florida lancelet
EGI59998     1341 ALAVCKELVSQYEEEtFDYLQLSILLIRMAKFYDCIVkqlrpePEYFRVAYYGKGHPVFLQNKVFVYRGKEYERLSDFCT 1420 Panamanian le...
EFR21674     1401 AIELCKELAQQYENEvYDYLSLSELYKRMSTFYENILrttryeSIYYRVTFFGLGFPEFLRNRAFVYRGNEYEDAGSFNM 1480 Anopheles dar...
Q14185       1293 AIALGKELAEQYENEmFDYEQLSELLKKQAQFYENIVkvirpkPDYFAVGYYGQGFPTFLRGKVFIYRGKEYERREDFEA 1372 human
Feature 1                     ###                ###                                      ####    
3B13_A        186 QLMTQFPNAEKMNTTSAPGDDvknapGQYIQCFTVQPVLde--hPRFKNKPVPd---QIINFYKsNYVQRFHYSRPVRRg 260  human
2YIN_A        191 QLMTQFPNAEKMNTTSAPGDDvknapGQYIQCFTVQPVLde--hPRFKNKPVPd---QIINFYKsNYVQRFHYSRPVRRg 265  human
EFX86015     1383 RIMLQFPNAETMNRLTPPDQEimdspQQYLQMNKVDPMLsaedqERFASKPVSe---QILRFYRvNRVQRFSFSRPFHRg 1459 common water ...
NP_477144    1417 RMLVQHPQAELMQTLEAPGDDitnsdGQYIQVNKVEPIMgq-afNKFNDKIINn---EIVKYFTaNNVQKFQFSRPFRDs 1492 fruit fly
XP_003248245 1382 RTLNQFPNATLMQTLSKPGSEitessNQYIQINNVEPVMde-rkEHLLRKPISq---QILRHYRvNDVKRFKFSRPFYRv 1457 pea aphid
EFA10254     1425 RILNEFPKAELLNKLTPPGEDitesdKQYVQINKVDPVMde-kkHRFSGKPVSe---QILNYYKvNDIQKFTFSRPFIRk 1500 red flour beetle
XP_002608345  959 RLLSQFPHAQPINKVTAPGPEilespSQHLQIFKVDPILee--rREFRGKPVAd---QILNFYKvNEVQKFTFSRPIRKg 1033 Florida lancelet
EGI59998     1421 RTLNQLPNAEQMNKLSPPTTEmlesyQQYVQINKVEPLMde-krHRLSGKPVTa--eAVLRYHRvNDVQRFRFSRPAPRk 1497 Panamanian le...
EFR21674     1481 RILSQHPRAELLTTLTPEPDVqq-seGQFVQIVKVDPVYr---dMRFGSKNTQsiasNIVKFYKsNNVSEFQFSRPIRDs 1556 Anopheles dar...
Q14185       1373 RLLTQFPNAEKMKTTSPPGDDiknspGQYIQCFTVKPKLd---lPPKFHRPVSe---QIVSFYRvNEVQRFEYSRPIRKg 1446 human
Feature 1                              ##  #                                      #   #           
3B13_A        261 tvd---------------penEFASMWIERTSFVTAYKLPGILRWFEVVHMSQTTISPLENAIETMSTANEKILMMINQY 325  human
2YIN_A        266 tvd---------------penEFASMWIERTSFVTAYKLPGILRWFEVVHMSQTTISPLENAIETMSTANEKILMMINQY 330  human
EFX86015     1460 qrd---------------sdnAFSTTWLERTILTTSHQLPGILRWFPVVESHVFELNPIQFAIETMEKSNKSLTELILSH 1524 common water ...
NP_477144    1493 tng--------------gdrdDVRNLWLERTELRISYPLPGILRWFPVVETNTFKISPLERAVEIMKDTNRDIRQLVILH 1558 fruit fly
XP_003248245 1458 dpkvn-----------snddnEFANLWIERTVLDTTYSLPGILRWFPVKHFDTYEISPLKNAIETMQETNKYLRELIIAH 1526 pea aphid
EFA10254     1501 dpyi-------------ddknEFGHLWLERTELTTTYPLPGILRWFPVSSSTVHEISPLRNAIETMEKANKTLKNYVVLF 1567 red flour beetle
XP_002608345 1034 drd---------------sdnEFANMFLERTNYVTAYKLPGILRWFEVTSTNTFEVSPLENACEIMENSNTELRHLIEQQ 1098 Florida lancelet
EGI59998     1498 eiitvnsdkekevntstnnsnEFASLWLERTVLVTSYPLPGILRWFPVTSSETYFVSPLRNAIETMEATNTALRDLIIAN 1577 Panamanian le...
EFR21674     1557 tv----------------ggdDIANTSYERTIMRTTDPLPGILRWFPVKSCETVMITPIEMAIETVDAKNRAIRDLVLEH 1620 Anopheles dar...
Q14185       1447 ekn---------------pdnEFANMWIERTIYTTAYKLPGILRWFEVKSVFMVEISPLENAIETMQLTNDKINSMVQQH 1511 human
Feature 1                 ## ##   ##  #######  #                             #               # ## 
3B13_A        326 qsDETLPINPLSMLLNGIVDPAVMGGFAKYEKAFFTEEYvrdhpEDQDKLTHLKDLIAWQIPFLGAGIKIHEKRVSdNLR 405  human
2YIN_A        331 qsDETLPINPLSMLLNGIVDPAVMGGFAKYEKAFFTEEYvrdhpEDQDKLTHLKDLIAWQIPFLGAGIKIHEKRVSdNLR 410  human
EFX86015     1525 rsDPKLTLHPLTMKLQGIVDAAVNGGISNYEKAFFTDRYllehpEDADSVSELQELFALQIPLVEAALVVHRSRVNqALQ 1604 common water ...
NP_477144    1559 ksDETLHINPLSMKLNGIVDPAVMGGFAKYEEAFLTDDYleqnpDDKELVEELKELIANQIPLLDLAIQLHRLRAPdSLK 1638 fruit fly
XP_003248245 1527 rnDSTLPLNPLTMKLNGILDAAVMGGVTKYEKAFFTSEYsvnheEDEHLIEKLKDLVASQIPLLDIGVKVHSARAPpSLT 1606 pea aphid
EFA10254     1568 nnDKDMQINPLSLTLNGILDAAVMGGIKNYEEAFFTEKYethhqEDDVLLQRLKDLIADQIPLLELCVRIHKENAPeNLQ 1647 red flour beetle
XP_002608345 1099 raDPTLTVNTLSLRLNGIIDAAVMGGTANYEKAFFTEEYmashpEDHARIERLKDLIACQIPLLEAGLKVHAQKAPdSLR 1178 Florida lancelet
EGI59998     1578 ksDPNLPLNPLSMKLNGILDPAVMGGIDNYEKAFLNAEYkdnhpDESSDLLKLEGLIAEQIPLLSVGLQLHKTRAPtELA 1657 Panamanian le...
EFR21674     1621 qsDPRIPVHSLSAIIKGVVDAAINGGIPIYEEAFLKPEYldrrpDDDHLVARLKDLIASQIPLLEVALLLHKMKTPaSLL 1700 Anopheles dar...
Q14185       1512 ldDPSLPINPLSMLLNGIVDPAVMGGFANYEKAFFTDRYlqehpEAHEKIEKLKDLIAWQIPFLAEGIRIHGDKVTeALR 1591 human
Feature 1          #  #                
3B13_A        406 PFHDRMEECFKNLKMKVEKEY 426  human
2YIN_A        411 PFHDRMEECFKNLKMKVEKEY 431  human
EFX86015     1605 PLQQRIEECFQEMRVHIESKY 1625 common water flea
NP_477144    1639 ALQEHLERCFADMQQHVEQRY 1659 fruit fly
XP_003248245 1607 PLQSRFEDCFEKMKVHIEENY 1627 pea aphid
EFA10254     1648 PLQKRFEDCFAKMQESVEEKY 1668 red flour beetle
XP_002608345 1179 KLQEKMDSLFVDMKTRVESEY 1199 Florida lancelet
EGI59998     1658 PFHQRLEQCFMSMRNQVEAKY 1678 Panamanian leafcutter ant
EFR21674     1701 PLHDQLEKCFATIQANVEAKY 1721 Anopheles darlingi
Q14185       1592 PFHERMEACFKQLKEKVEKEY 1612 human

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