Conserved Protein Domain Family
HDAC_Hos1

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cd11680: HDAC_Hos1 
Class I histone deacetylases Hos1 and related proteins
Saccharomyces cerevisiae Hos1 is responsible for Smc3 deacetylation. Smc3 is an important player during the establishment of sister chromatid cohesion. Hos1 belongs to the class I histone deacetylases (HDACs). HDACs are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues in histone amino termini to yield a deacetylated histone (EC 3.5.1.98). Enzymes belonging to this group participate in regulation of a number of processes through protein (mostly different histones) modification (deacetylation). Class I histone deacetylases in general act via the formation of large multiprotein complexes. Other class I HDACs are animal HDAC1, HDAC2, HDAC3, HDAC8, fungal RPD3 and HOS2, plant HDA9, protist, archaeal and bacterial (AcuC) deacetylases. Members of this class are involved in cell cycle regulation, DNA damage response, embryonic development, cytokine signaling important for immune response and in posttranslational control of the acetyl coenzyme A synthetase.
Statistics
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PSSM-Id: 212543
Aligned: 14 rows
Threshold Bit Score: 408.577
Created: 14-Mar-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
active siteZn binding site
Feature 1:active site [active site]
Evidence:
  • Comment:Active site includes Zn binding site, lipophilic tube and foot pocket.
  • Comment:Active site consists of a long narrow tunnel (that apparently serves for substrate binding) and a cavity with Zn ion (that is important for catalysis). In this structure, the tunnel is filled by the aliphatic chain of the inhibitor.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
EDK46330       6 ILVDVDILtelADKLPSnh-gRLSLVQELIRAYalhk---------ycqiIDVVAPVDKRVLTQYHDADFIDHIFAprld 75  Lodderomyces el...
Q12214         5 VISTSIFQsqvADLLPCnnhqKSQLTYSLINAYdllq---------hfdeVLTFPYARKDDLLEFHSKSYIDYLINgrfn 75  Saccharomyces c...
CAH02339       4 IISTSSLQcqiADILPCnngkKAQLIFALIRAYglld---------yfdhVNDATVATIKDMTKFHTLDYVKHLLTeeft 74  Kluyveromyces l...
AAS51580       4 IISSSCYQaqiCDLLPCndncKSQLIHGMLGAYgllq---------hfdkVITAPYATKHTLNKFHSMQYLSFALDprfn 74  Ashbya gossypii...
XP_001386791  17 WLNDSERVtkiCDLLPSnk-gRQSLISSLLSAYglre---------rcygIIGEYRASRQELASYHDENFVDFLLQdrlr 86  Pichia stipitis...
EER32231       7 HLALSDNAtkiCDLLPSnk-gRQSLVYGLIKAYnldq---------icddTIEILACSAKELTMYHSEEFVNHILHtrdn 76  Candida tropica...
EGW30300       6 YLTSSLDLsriIDLLPAne-gRSTLVTSLIQAYgidk---------lvsgIIPIRRINARKVTNYHDQNFTACLLKerhe 75  Spathaspora pas...
EFC38663      37 YGSAANLIqeeIDELPS----RSELVHSLIEAFgile----------kveSIEPEKALMKDLQIYHSKEYVHALYKidks 102 Naegleria gruberi
CCE43923       5 ILAHSELLtrlADELPSnk-qRQSLVQGLLNAYkldq----------qceILPISPVEWTLLEQYHDKDFIKELQRprnd 73  Candida parapsi...
EGU11701       8 AYVHSGELigaADCLPAne-gRAWLVHSLVDAFslvydsdgsregparaqIIEPERASRADLLKFHDERYIDAILGrddg 86  Rhodotorula glu...
Feature 1                                                                                        
EDK46330      76 idkqdehynllskrldsif----------------------------------------------pfdkeclipqdqtee 109 Lodderomyces el...
Q12214        76 kmmaqdvnnpmveskwselseladnwnekidynpsqdlqrfttrenlynyylnhsqalennmdcinnsevptndkptdty 155 Saccharomyces c...
CAH02339      75 ynsteyiekedqvlrlaevarkfyqdsdveddnq----------------vlwfdneyelfryfkeefnnanseiddvsk 138 Kluyveromyces l...
AAS51580      75 rstedcedwaqvgqvarryreahgssprelwhn------------------tkaelyskfvsrtgyqiadegsdnderaa 136 Ashbya gossypii...
XP_001386791  87 ldrtvtslasn--------------------------------------------------------------hdtinde 104 Pichia stipitis...
EER32231      77 edhpked----------------------------------------------------------------------esy 86  Candida tropica...
EGW30300      76 ldcssdmyheiselvekvg----------------------------------------------rneqsdeesdeeieg 109 Spathaspora pas...
EFC38663     103 lkarsslgdkeedmsdee-----------------------------------------------vssdessnsdnddat 135 Naegleria gruberi
CCE43923      74 idsqledyrevrdfir----------------------------------------------------dqfddvdeseed 101 Candida parapsi...
EGU11701      87 edeagdsseddesageedtp-------------------------------------------sprtfglagdsfasepp 123 Rhodotorula glu...
Feature 1                                                                         ##       ##    
EDK46330     110 elvsldeNYGLthDCYVFpFMRHYVALTAASTIELATHIarmvvnsrdsddlhirpIGINWYGGRHHCHraKCSGFCYIN 189 Lodderomyces el...
Q12214       156 ilnsetkQYNLegDCPIFsYLPMYCQVITGATLNLLDHLspt-----------erlIGINWDGGRHHAFkqRASGFCYIN 224 Saccharomyces c...
CAH02339     139 lddkdftKYGLqhDCPKFpFLSMYLQVIVGGTLSLLQHIdhq-----------tpsIAINWDGGRHHALkhYASGFCYVN 207 Kluyveromyces l...
AAS51580     137 masaalaKYGLhdDCPVMdYLPMYIHTVAGATLALAKELsrhr----------gsaLAVNWDGGRHHALkaRASGFCYVN 206 Ashbya gossypii...
XP_001386791 105 isisesqRYGLvhDCYIFpFIGEYVRAVGGSSIASAKTLireas-------ssiqnVVVNWYGGRHHCTksRAAGYCYIN 177 Pichia stipitis...
EER32231      87 elnkldkKFGLvyDCYYFpSMDQYIRLTAGSSILTAKTIisqqks------stkqiIGINWYGGRHHCHksQASGFCYIN 160 Candida tropica...
EGW30300     110 egelndeEYGLmyDCYPFpFMSHYIILTASSTIATAQQLith-----------pnsVAVNYYGGRHHCGkrKAAGFCYVN 178 Spathaspora pas...
EFC38663     136 dieelkkQFGLvdDAHDFkGMFNYALYIGGSCNAIAKEVnhflkss----sseerlTILNFEGGRHHARksRAAGFCYVN 211 Naegleria gruberi
CCE43923     102 ysefnagKFGLefDCYPFpFMRYYVNLTAASTIQLAKRVvnysre-----idfggvIGINWYGGRHHCHrsKCSGFCYIN 176 Candida parapsi...
EGU11701     124 rkrrkteGVGLqdDCPVFpELSDYVQLVAEASTTAARILrdg-----------eadVAINWTGGRHHAKrgEASGFCYVN 192 Rhodotorula glu...
Feature 1                                                  # #                                   
EDK46330     190 DVVLGINALrkl--------------------tsaTVFYLDLDLHHGDGISQAFQYSkKVTTCSIHRFDVGFFPGTGdvr 249 Lodderomyces el...
Q12214       225 DVVLLIQRLrka--------------------klnKITYVDFDLHHGDGVEKAFQYSkQIQTISVHLYEPGFFPGTGsls 284 Saccharomyces c...
CAH02339     208 DIVLLIQSLrrk--------------------gwkRVTYIDFDLHYGDGVAKAFRFSeNVQTISVHLYEPGFFPGTGsle 267 Kluyveromyces l...
AAS51580     207 DIALLIQTLrrq--------------------gflRVSYVDFDLHHGDGVENAFRYSkNVQTCSLHLFEPGFFPGTGack 266 Ashbya gossypii...
XP_001386791 178 DVVLAIGVLrkk---------------------frRIFYLDLDLHHGDGVESGYEHSkNVFTCSIHRYDLGFYPGTGrma 236 Pichia stipitis...
EER32231     161 DIVLSINILrky---------------------lgSVFYLDLDLHHGDGVENAFKFSkKISTCSIHRYDIGIFPGTGslk 219 Candida tropica...
EGW30300     179 DIILGISHLrqa---------------------ykRIFYLDLDLHHGDGVERGYFQSrNVGTCSIHRYDKGFYPGTGsle 237 Spathaspora pas...
EFC38663     212 DVVMLSLLIkr-----------------------rKILCIDIDIHHGDGTEEAFFSSeRVFTVSFHQFGPGLYPGTGttd 268 Naegleria gruberi
CCE43923     177 DIVLGITTIrkm--------------------sagGVFYLDLDLHNGDGVAEAFKFSkKVTTCSVHRYDTGFFPQGSgkl 236 Candida parapsi...
EGU11701     193 DIVLAIMELrsspkppppsssldsspqpslpsrisRVLYLDIDLHHGDGVESAFFTSpYVLTLSVHLHAPLFFPSSGald 272 Rhodotorula glu...
Feature 1                                                               #      #                 
EDK46330     250 ---------asvNGDYNIPTKRGlnDESLRWIVENIVQPLiqkhqPQYLFIQCGCDGLSTDPHkeWNLTICGYAKVIKLL 320 Lodderomyces el...
Q12214       285 d-------srkdKNVVNIPLKHGcdDNYLELIASKIVNPLierhePEALIIECGGDGLLGDRFneWQLTIRGLSRIIINI 357 Saccharomyces c...
CAH02339     268 e-------trnsKQMVNLPVLHGmdDKYLLELISSVITPLietfnAECIVIQCGSDGLSGDKYneWQLSIRGLTHAIISI 340 Kluyveromyces l...
AAS51580     267 n--------ctdNSVLNVPLLHGvdDSTLDHVVDHIVTPAvqrhdPEVLIIQCGGDGLSGDKYgeWQLSIHGLTRNILKL 338 Ashbya gossypii...
XP_001386791 237 ---------dskSKKVNIPTRRGlsDNSLLYIIKNIVVPLimgfePEVIIIQAGCDGLGTDTHkeWNLTIKGFSQVLDFL 307 Pichia stipitis...
EER32231     220 ---------ssaTNTFNIPTRKGlnDKSMSWIIDEVVIPLiekfgPKSIVIQAGCDGLSTDEHkeWNMSIKGYANSIDTI 290 Candida tropica...
EGW30300     238 ---------ssdKYRYNVPTRHGlsDESMLFIIREIVIPImhkfsPQCIVIQAGCDGLATDVHheWNMTISGFCQVIKTV 308 Spathaspora pas...
EFC38663     269 nng----tgrgkYHNLNVPLKEGlsDKNFERIFTSVIAKSfekfePEVVILVMGADNLNGDPLgtWNLSLESFEYVTNFV 344 Naegleria gruberi
CCE43923     237 e--------qsvSGMYNVPTKRGltNDDMIWIIENIVLQLihrhqPKYLIVQLGCDGLNTDPNneWNMTIKGYSEAIQLL 308 Candida parapsi...
EGU11701     273 stgpanpkapsrGHALNVALEPGlgEANFKRVWDSCVEKVakeygADAVVVQVGVDGMVGDPCkeWNLPLSAYGYALERV 352 Rhodotorula glu...
Feature 1                      # #                
EDK46330     321 Ldai-ripVILLGGGGYNftEAAKFWTYLTALV 352 Lodderomyces elongisporus NRRL YB-4239
Q12214       358 MksyprahIFLLGGGGYNdlLMSRFYTYLTWCV 390 Saccharomyces cerevisiae S288c
CAH02339     341 MdmfrdkqVFLLGGGGYNelLVSRFYTYLTSKV 373 Kluyveromyces lactis
AAS51580     339 VqahkfkkIALLGGGGYNgrLQSRFYAYLTSML 371 Ashbya gossypii ATCC 10895
XP_001386791 308 LkefepipFLILGGGGYNhtETAKCWAHATRTI 340 Pichia stipitis CBS 6054
EER32231     291 LerfdktpVMILGGGGYNhtETAKCWTYITGKV 323 Candida tropicalis MYA-3404
EGW30300     309 Ldef-dvsTMILGGGGYNhtEVAKCWTYLAASI 340 Spathaspora passalidarum NRRL Y-27907
EFC38663     345 KnelkskvTIIVGGGGYNyiHTAIAYATVSNMM 377 Naegleria gruberi
CCE43923     309 Vkra-glpIMVFGGGGYNhaEVARCWTFVTGTL 340 Candida parapsilosis
EGU11701     353 Lrwn--krTLVLGGGGYNsaNAARAWAYLTSVA 383 Rhodotorula glutinis ATCC 204091

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