2L3N


Conserved Protein Domain Family
TAZ1_RBM

?
cd11671: TAZ1_RBM 
Click on image for an interactive view with Cn3D
RAP1 binding motif of Schizosaccharomyces pombe TAZ1
S. pombe TAZ1 recruits the spRAP1 protein to telomeres. The TAZ1 RAP1-binding motif (RBM) binds the RAP1 C-terminal domain (RCT), which structurally resembles the first 3-helix bundle found in yeast and human RAP1 RCT. TAZ1, an ortholog of TRF1 and TRF2, has a TRF homology (TRFH) domain, the RBM domain, a dimerization domain, and a myb-like C-terminus. RAP1, identified in budding yeast as repressor/activator protein 1, is a well-conserved telomere binding protein and is also found in fission yeast and mammals. In Saccharomyces cerevisiae, RAP1 directly binds DNA and is involved in transcriptional activation and mating type information gene silencing, as well as in binding to numerous binding sites at each telomere, where it functions in telomere length regulation, telomeric position effect gene silencing, and telomere end protection. Like S. pombe RAP1, human RAP1 does not bind telomeric DNA directly, but binds telomere repeat binding factor 2 (TRF2) through the RAP C-terminal domain (RCT).
Statistics
?
PSSM-Id: 212562
Aligned: 6 rows
Threshold Bit Score: 30.5533
Created: 10-May-2012
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
 
heterodimer
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:2L3N: Schizosaccharomyces pombe TAZ1 binds RAP1, contacts at 4A
  • Comment:In 2L3N, a fusion protein joins RAP1 RCT and TAZ1 RBM via a 14 residue flexible linker

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1        #              #                                            ####### ##          
2L3N_A        70 SRKDLSVKGMLYDSDS-------------------------------------------QQILNRLRERV---------- 96 
P79005       361 ERKDLSVKGMLYDSDS-------------------------------------------QQILNRLRERV---------- 387 Schizosaccharom...
NP_594047    361 ERKDLSVKGMLYDSDS-------------------------------------------QQILNRLRERV---------- 387 Schizosaccharom...
XP_002173017 496 PTTDLSSPWFLYNSEQhsfseadnsstpmydasdfppvrdgnapysnramvmessmeppQQSKSRKMTGArrpr------ 569 Schizosaccharom...
XP_002485985  23 AATPTQTPNMTKDSRKaatatpvaaksvk-----------------lqqttttttprrsQVPGGRRSTRSqsreadeai- 84  Talaromyces sti...
XP_754899    483 ERAPVSTAESRGRRKSskpv------------------------------------flnPVSIQRLMQRQqrrrltreat 526 Aspergillus fum...
Feature 1                            
2L3N_A        97 -------------SGSTAQS 103
P79005       388 -------------SGSTAQS 394 Schizosaccharomyces pombe 972h-
NP_594047    388 -------------SGSTAQS 394 Schizosaccharomyces pombe 972h-
XP_002173017 570 ---------ktrqRWSAAQE 580 Schizosaccharomyces japonicus yFS275
XP_002485985  85 -----aqngngkgKGKKAQP 99  Talaromyces stipitatus ATCC 10500
XP_754899    527 etrgqtdvvaqvvDGESTQS 546 Aspergillus fumigatus Af293

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap