Conserved Protein Domain Family
LamB_like

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cd11665: LamB_like 
Aspergillus nidulans lactam utilization protein LamB and similar proteins
This eukaryotic and bacterial subfamily of the LamB/YbgL family, includes Aspergillus nidulans protein LamB. The lamb gene locates at the lam locus of Aspergillus nidulans, consisting of two divergently transcribed genes, lamA and lamB, needed for the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression. Although the exact molecular function of lamb encoding protein LamB is unknown, it might be required for conversion of exogenous 2-pyrrolidinone to endogenous GABA.
Statistics
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PSSM-Id: 212130
Aligned: 14 rows
Threshold Bit Score: 376.652
Created: 18-Jan-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative active
Feature 1:putative active site [active site]
Evidence:
  • Comment:based on similarity to Pseudomonas Aeruginosa hypothetical protein Pa4511

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #                                                     #          #         
P38096        8 ALINCDMGEAYGnWTCGPDLELLPLIDIANIACGFHAGDPLIMMETVRNCKAHNILVGAHPGLPDIQGFGRREMklsPEE 87  Aspergillus nidu...
ACZ51507     30 VEINVDCGEGFGfWEGGPDEDLMPLIDAANIACGGHAGDPVIMRRTVALAKKYGKKVGAHPGFPDKVGFGRRVLamtPEQ 109 Cryptococcus hev...
EFQ24907      9 YDINADMGEGFGpWKMGPDEELMSYIDAANIACGFHAGDPAIMLKTVRLCKRHNVKAGAHPGLQDMLGFGRRKMeidPND 88  Glomerella grami...
ZP_08121780   2 VAINCDMGESYSiYHCGDDEGLMPYVTVANVACGFHASDPRVMTRTVKLAKRHGVRVGAHPSLPDREGFGRREMkldRDE 81  Pseudonocardia s...
EDK40399     29 CEINCDMGEGFGpWKMGPDAELMPLIDTANIACGGHAGDPRIMRETIQLAKKHGVRVGAHPGLPDKVGFGRRQWalsPQD 108 Pichia guillierm...
EGN97304      8 GTVNCDMGESFSiYSVGDDENLMKTIHLANIACGFHAGDFSVMNQAVIYAKENNVLVGAHPSLPDLQGFGRREMaiqPDE 87  Serpula lacryman...
ADV14512      2 VTLNCDMGESYGnWRFGDDAGIMPHIDCANIACGFHASDPWTMLKTVRLALSHGKRVGAHPSLPDREGFGRREMrlqPEE 81  Mesorhizobium ci...
ADH88880      3 VVINCDMGEGYGlYSCGDDAGIMPHIQIGNVACGFHAADPVVMSKTVRLAAEHGVAVGAHPSFPDLQGFGRRDMamgREE 82  Starkeya novella...
EGX93707     25 IRIHCDMGEAFGnWTMGDDEAIMPHINSCSIACGFHAGDPMVMYKTIQAARRHGLAIGAHPSFPDLQGFGRREMkmdAVE 104 Cordyceps milita...
EGU11222      5 ATLNCDCGESYGqYTIGDDEGLFPIVDIANCACGFHASDFDVMAKTVLLAKKHAVGIGAHPSLPDQQGFGRRIMhlpPES 84  Rhodotorula glut...
Feature 1                                 # ##   #                                              
P38096       88 LTAITIYQVGALQGFLdrEGVRLNHVKPHGVLYGMMCrDYEVAKAVMLGIPKg---------IPVFGLpgtNMEKAANdl 158 Aspergillus nidu...
ACZ51507    110 AYAEMLYQIGALKAFLdeAGVPLNHIKPHGMWYIMMQnNEEVNDAAMRAISHf--------kVPVYGMpntLHESGAKky 181 Cryptococcus hev...
EFQ24907     89 VYAMVLYQVGALKAILdsEGVELSHIKPHGELFFYMQrDELIMRAVLEACATfg------snVPVYASqnpAQEAMCKel 162 Glomerella grami...
ZP_08121780  82 LTAAVVYQIGALTGFLraEGMELHHVKAHGSLYGMASrDEEVAAAVADAADVf--------gAPLMGMagsVHEKVWGdr 153 Pseudonocardia s...
EDK40399    109 VYDLVLYQVGALKAFLdaEGMPLSYIKPHGELFFYVErDEEIMHAVLDAAKVf--------gVPVMAGksvRYEQVAKke 180 Pichia guillierm...
EGN97304     88 LASCFIYQVGALNGFLkrHGLLMNHIKPHGSVYGQTSrDIELARAAVGVAKTfndsaaqpggIAFMGLpgtAHQQAAEel 167 Serpula lacryman...
ADV14512     82 LTAAFLYQIGALTGMLaaEGGQLSHVKPHGIIYGMAAhDVDTALAIAAAVKPf--------gVPLFGMagtCHETAAAel 153 Mesorhizobium ci...
ADH88880     83 LSACVLYQIGALKGFLdaAGMKLNHVKPHGALYGAAMrREEVAHAVADAAQVy--------gVPVVGMagtLHEKVYRar 154 Starkeya novella...
EGX93707    105 CEKMVIYQIGALKAFLdiEGIPMSHISPHGALYGVMCkDAAICAAVCRAARHftaad-gttpVPMIGAsrtLMETTCAam 183 Cordyceps milita...
EGU11222     85 FFNCLLYQAGAIDAFLklNGLKFNHFKPHGQAYVMSAkDLELARQSAKIAKLy--------gVPLLGLpgsTHQEACKle 156 Rhodotorula glut...
Feature 1               #  #       #  #                                                 #       
P38096      159 GIEFRAEFYGDVKYDSnGMLVIDrkkk---pwdPADVEKHVRQQLEdqsvtsvdg-vvvplpikdYDVSICCHSDSpgCL 234 Aspergillus nidu...
ACZ51507    182 GIPFIPEAFVDVNYNSkAVLLGVpgsr---kmtTEEIYEATRSLGRdgvvpavdy-tpvdvgvkgAPFTICLHSDFktCK 257 Cryptococcus hev...
EFQ24907    163 GIPFQGEVYVDIDYSPdGRLVPVaqsk---vatPELCYERALSALLddsgkdnnn-rvfsfgfqgKPFSICVHSDHptVL 238 Glomerella grami...
ZP_08121780 154 PAGFISEYYADLDYRDdGSLIITrehq---afdPETSAAGALRAVTdgvatse-----ngreipvRADCVCVHSDTpnAV 225 Pseudonocardia s...
EDK40399    181 GVQFIQEFYPDLNYNSeGKLVKIfagpk-sartPETIMNAVLQAGFadqtvdted-kpmnlnfggAPFTVCLHSDMptAL 258 Pichia guillierm...
EGN97304    168 GVPFIAEWFADLNYSPeGKLLITkihe---hipTEEICTRVRTLLKsrqvtttsg-sllpmsddiSEVSICCHSDTkgAV 243 Serpula lacryman...
ADV14512    154 GVAFVGEFFPDLAYAPgGSLIIPrvqs---aidLTLAEHRMVGALTrrelvtt-----dgtirpvDFDTVCIHSDPpnAR 225 Mesorhizobium ci...
ADH88880    155 GLTFISEYYVDLDYDAsGALIITrehe---ardPAEAARRAVRMLTegkavti-----dgrdfdmKAETICIHSDTpnAA 226 Starkeya novella...
EGX93707    184 GIPFVQEVIADLEYDAhGDCVITrthd---avdLAALRVRVRDALRtgriagqgg--pvdlklgsAPLSLCVHSDTpgAV 258 Cordyceps milita...
EGU11222    157 GAEFIPEFYADLQYGDeGQLLAPpsaaqrhpitPEQVYTRVRKMLEtstwmslndgkelrfpegtDKVSICVHGDFpgAV 236 Rhodotorula glut...
Feature 1                 
P38096      235 EIIKTTKKVV 244 Aspergillus nidulans FGSC A4
ACZ51507    258 ENVAAARRAV 267 Cryptococcus heveanensis
EFQ24907    239 QNVTGVRKAV 248 Glomerella graminicola M1.001
ZP_08121780 226 ELARAVHTAL 235 Pseudonocardia sp. P1
EDK40399    259 ENARKTRAAI 268 Pichia guilliermondii ATCC 6260
EGN97304    244 EIAQAVKAVV 253 Serpula lacrymans var. lacrymans S7.3
ADV14512    226 DVAALMRRII 235 Mesorhizobium ciceri biovar biserrulae WSM1271
ADH88880    227 ELARVLKEAV 236 Starkeya novella DSM 506
EGX93707    259 GVAAAVRQVV 268 Cordyceps militaris CM01
EGU11222    237 ETAKAVKRAI 246 Rhodotorula glutinis ATCC 204091

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