Conserved Protein Domain Family
TIN2_N

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cd11657: TIN2_N 
N-terminal domain of TRF-interacting nuclear factor 2; shelterin complex protein of telomeres
TIN2 is one of the six proteins of shelterin complex, which acts to protect telomeres from DNA damage repair machinery. TIN2 binds directly to TRF1 and TRF2 and stabilizes TRF2 complex-telomere binding by tethering it to the TRF1 complex. TIN2 binding to TRF2 is primarily via the TRF binding motif (TBM) region and the N-terminus, while the far C-terminal region has lower affinity. The TIN2 TBM, but not the N-terminal region, is involved in TIN2 binding to TRF1. Truncation of the TIN2 N-terminus in mouse results in telomere elongation, suggesting a negative regulatory function of this region. Three shelterin components (TRF1, TRF2, POT1) bind DNA and 3 components (TIN2, RAP1, TPP1) are recruited by these DNA binding factors. TRF1 activity at telomeres is regulated in part by selective ubiquitination and degradation. Ubiquitination of TRF1 is mediated by Fbx4, which binds TRF1 in the TRFH domain, via a small GTPase module. When bound to telomeres, TIN2 acts to protect TRF1 from SCF-Fbx4 mediated ubiquitination. F-box proteins act in substrate recognition as part of Skp1-Cul1-Rbx1-F- box (SCF) protein complexes. Tankyrase-mediated ADP-ribosylation releases TRF1 from telomeres, rendering them susceptible to ubiquitination and degradation, promoting telomere elongation. TIN2 also binds PIP1, which recruits POT1 to telomeres.
Statistics
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PSSM-Id: 240667
Aligned: 24 rows
Threshold Bit Score: 116.238
Created: 1-Feb-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAH19343        9 PAALRFAAAaSWQVVRGRcVEHFPRVLEFLrsLRAVAPGLVRYRHHERLCMGLKAKVVVELIlqgrpwaqVLKALNHHFP 88   human
CAF98918      984 PGRLRVVSArVYSIVRNRdVEHFEKVLNFLeeTHTLLPRQVAPIKHMKIIFGLKTMLIMWMLkrergmidTMFKINQFFP 1063 spotted green...
CAF95776       56 IPPLRLLTAaMWQVARRQsMKNLVMLEDFVflVTEAVPQLLTDRQRSLLLLALRAKQPDEELdrc---waALMTLNRNLT 132  spotted green...
CAG04154       29 IPPLRLVSAaMWQVIQRGhVQDYGMVEEFIstVSEIVPELLNADQKAELLLGLRARVSPGDSaspc-ksaNKAVCFPKFP 107  spotted green...
NP_001090446   19 TPDLPAVTSaIWQVMQRReTQHFGRVLEFLelVHAQVPDLLCYRHHAKLSVGLRGKMVLDMVekscslmsILTALNLHFP 98   African clawe...
XP_001920033   70 PCRVRAVAAeVWRIVQTRdIQHFERVLEFLdvTYTLEPRLVTPIKHMKIKFGLQTLVIMWMLwndesaanITVKMENFFP 149  zebrafish
XP_003445079   20 ASPLQLTYSyIWQVVRHKnVKQYGKVEEFVtmVVQTVPDLMSFKQTAQLILGLRARIILDLLrkd--gppDSKAIQTLIN 97   Nile tilapia
XP_003979690    1 MAGRTHENA-LWKVIKQRdAMQYGVVEEFVtsACETVPGLLTVRHQGKLALGLRGRLILELCqk----qpDEEVITPHLE 75   torafugu
XP_001380222   11 ASSLRLVAAaAWWVVRRRlSAHYPRVLDLLgtLKVSAPGLVRPRHHARLCMGLRAKVVVEMIlagqpwslVLDALNRHFP 90   gray short-ta...
XP_003978033   22 VPPVRLVAAaIWKTIEQRvVAQYGLIEEFIslVTDIVPEILTIDQRVQLTLGLRARLILELCqs----taDLETVQPHLD 97   torafugu
AAH19343       89 Esgpivrdpka--tkqdlrkileAQETFYQQ---VKQLSEApvdlaskLQELEQEYGEPFLa-aMEKLLFEYLCQLEKAL 162  human
CAF98918     1064 Srlpqyqnqcn---qreiflmkkNHLDFKHLa--QTLAMDKskleryvRNQMQQQYGDHYAq-kVEDRLLQYLQKLETAL 1137 spotted green...
CAF95776      133 Egpadrr----------rllqevFNCSFDSAl--QSLISDFly---kiEQLFPVPDFKQVIrhlRTNKPCAPTSTAAENV 197  spotted green...
CAG04154      108 Rkl-------------------lTQLRTLQNrpsSKTLNDIsrpfqalSGCFRLKRNFLLQv-vLELCRAEPMADAETIE 167  spotted green...
NP_001090446   99 Pslpdepntv----lrdhsrlqrCHSHFRKLv--LRLIRDDkfrsnyiETKLQSEYGETFMa-sLEKLLWEFLYRLQTVL 171  African clawe...
XP_001920033  150 Nklpeyykcr----rkhvdlmqkNQKEFKSFa--HVLARDRdmretyiHDLMEEQYGERYAq-kLEERLLHYLGELDKLL 222  zebrafish
XP_003445079   98 Klkvstssg-------kdaevekSQTNFMVLv--QNLLKNPterkrffKEVFPVQYGTKFDt-aLQTLIAGLVCKLEQLL 167  Nile tilapia
XP_003979690   76 RiripaamsgsghiqkrdlkiqrTVENFHLLv--RTLLKDAaereqffKEEFPVEYGLEFDq-eLEKLLWEFLIRVDQLL 152  torafugu
XP_001380222   91 Esgppecsssa---avwdrkiveAHEAFCQRv--KHLAEDPedf-gshLQELEQEYGEPFLv-aLEKLLFEYLCQLEKTL 163  gray short-ta...
XP_003978033   98 Rmqllikv--------gatnietPHLEFVELv--KKMLNNSdh----rQQFFQVSSMFQVA---SSVLEECVQSQSQEQL 160  torafugu
AAH19343      163 P--TPQAQQLQDVLSWMQpgvsits------slawrqyGVDMGWLLP 201  human
CAF98918     1138 PgdAYIDKVYLETIATTLkkl--------------lhcEVASLDLVK 1170 spotted green pufferfish
CAF95776      198 PtpPPPGRPEEAPPPQSPllephplkth-tcfqcdavfRSDAELLVH 243  spotted green pufferfish
CAG04154      168 Ah-LERIRALVSTWAAQPcfaqve--------fpesnfVDQVESLMK 205  spotted green pufferfish
NP_001090446  172 Ih-QPFESPEESQLTPTQlpgsqkqdmsknclfpvddhTSPSCSLLQ 217  African clawed frog
XP_001920033  223 Pq-PTYIDQVLKQPHSYErgekilkkl---lskdsaslATALKRLLH 265  zebrafish
XP_003445079  168 P--MPNLSQLGAMISTEPsvleac--------ggfipdPVDLKTLLL 204  Nile tilapia
XP_003979690  153 P--APSLARTVSWLSEAPpvleec--------arsatqPQLLKLLLQ 189  torafugu
XP_001380222  164 P--VLQLHEGQGLKKPSEtltgr----------dfnlaPLGRRQILA 198  gray short-tailed opossum
XP_003978033  161 KllLHYQKDHSHLDHNEGsm-----------------eGAFITSALK 190  torafugu
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