3L82,3L2O


Conserved Protein Domain Family
FBX4_GTPase_like

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cd11656: FBX4_GTPase_like 
Click on image for an interactive view with Cn3D
C-terminal GTPase-like domain of F-Box Only Protein 4
F-box proteins are involved in substrate recognition as part of SCF (Skp1-Cul1-Rbx1-F-box protein) ubiquitin ligase complexes. Fbx4 (or Fbxo4) binds to the telomere repeat binding factor 1 (TRF1), whose activity at telomeres is regulated in part by selective ubiquitination and degradation. This ubiquitination of TRF1 is mediated by Fbx4, which binds to the TRFH domain of TRF1, via the C-terminal domain characterized by this model, a module resembling a small GTPase domain that lacks the GTP-binding site. When bound to telomeres, TIN2 acts to protect TRF1 from SCF-Fbx4 mediated ubiquitination. Tankyrase-mediated ADP-ribosylation releases TRF1 from telomeres, rendering them susceptible to ubiquitination and degradation, which in turn promotes telomere elongation. Fbx4 has also been reported to target cyclin D1 for degradation by the proteasome, a mechanism ensuring the fidelity of DNA replication. More recently, these findings have been disputed.
Statistics
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PSSM-Id: 212555
Aligned: 9 rows
Threshold Bit Score: 337.157
Created: 10-May-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:TRF1 binding interface [polypeptide binding site]
Evidence:
  • Comment:binding of TRF1 by SCF-Fbx4 leads to TRF1 degradation
  • Structure:3L82: human F-box protein binds TRF1, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
3L82_B         2 GAVTSFLHSLIIQNEPRFAXFGPGLEELNTSLVLSLXSSEELCPTAGLPQRQIDGIGSGVNFQLNNqHKFNILILYSTTR 81  human
NP_036308    162 GAVTSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNqHKFNILILYSTTR 241 human
3L2O_B        87 AVYRMCCPYLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNqHKFNILILYSTTR 166 human
XP_429141    160 GAVTSFLQSLVTQTEPRFAMFGPGLEELDDSLVRKMMTCPEILLVAGLPQRRIHGIGSGVSFQINNnQKFNIVTLYSTTS 239 chicken
XP_003216275 154 GAMASFFQSLITQAEPRFAMFGPGLEDLSESLMHKMMGTPEILPLAGIPSRQIHGIGSGVTFHLNN-QKFNILTLYSRIS 232 green anole
XP_003446193 163 EVVTSFFQSLVPASEPRYAMFGPGMEQLDVSLVTRLMHAPDILPVSGTPHRQINGIGSGISYMFNNqHKFNILTLYSTNR 242 Nile tilapia
EGD82955     146 SPPPVVRHLFARHRRFRVAVFGAGLEHIAHGLVTEILWGEDSPFQVLGMSPGTDGVGGGVSLRVDAhTAFDMITLYQKTA 225 Salpingoeca sp....
NP_001121213 161 GAVTSFLQSLVMQTEPRFAMFGQGLEQLDDSLVTRMMTSPELRPVVSILQRQIDGIGSGVTFQLDDqHKFNILTLYSRTR 240 African clawed ...
AAH48098     162 GAVTSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNqHKFNILILYSTTR 241 human
Feature 1                                                                                        
3L82_B        82 KERDRAREEHTSAVNKXFsrh--neGDDQQgsr-ysvIPQIQKVCEVVDGFIYVANAEAHKRHEwqDEFSHIXAXTDPaf 158 human
NP_036308    242 KERDRAREEHTSAVNKMFsrh--neGDDQQgsr-ysvIPQIQKVCEVVDGFIYVANAEAHKRHEwqDEFSHIMAMTDPaf 318 human
3L2O_B       167 KERDRAREEHTSAVNKMFsrh--neGDDQQgsr-ysvIPQIQKVCEVVDGFIYVANAEAHKRHEwqDEFSHIMAMTDPaf 243 human
XP_429141    240 VERKRAREEQAAVVNKMFyqenstvGNQQAvqy--nvIAQVKKVCEVVDGFIYVANAEAHKKHDreEELAHILAMIDPal 317 chicken
XP_003216275 233 KERRRPKEEDSTPINKIFhaennpdGTTQYt-----lIDHVKNMCGLIDGFIYVADAEVHKKHNrpTEFAQIMAMLDPal 307 green anole
XP_003446193 243 AERERARVQQESISNKLFtf----eGNDDSgdpvcvpAPQVQQVCQVVDGFIYVANAEPGRGGEk-SEGVQIRAVLNCsr 317 Nile tilapia
EGD82955     226 AERARQSDEDTGRLQNGR-------GELREser--rvCEHVDAFVMVVDAARLGDAASAAHVRRccDELQLFMNPAWTr- 295 Salpingoeca sp....
NP_001121213 241 NERDRARVDPNVVGNKMFvpe--apGDNQLatp-dnlIPQVKEVCRIVDGFIYVANAESHNNHNrpEEMAQVLAMTDPtf 317 African clawed ...
AAH48098     242 KERDRAREEHTSAVNKMFsrh--neGDDQQgsr-ysvIPQIQKVCEVVDGFIYVANAEAHKRHEwqDEFSHIMAMTDPaf 318 human
Feature 1                                         ##  ##          #####          #            
3L82_B       159 gsSGRPLLVLSCISQGDVKRx-----------PCFYLAHELHLNLLNHPWLVQDTEAeTLTGFLNGIEWILEEVESK 224 human
NP_036308    319 gsSGRPLLVLSCISQGDVKRm-----------PCFYLAHELHLNLLNHPWLVQDTEAeTLTGFLNGIEWILEEVESK 384 human
3L2O_B       244 gsSGRPLLVLSCISQGDVKRm-----------PCFYLAHELHLNLLNHPWLVQDTEAeTLTGFLNGIEWILEEVESK 309 human
XP_429141    318 gpPNRPLLVLSCVSHFGVERi-----------PCVYMAHQLQLNLLPRPWMVQDTVAaTLSGLLSGIEWLLEEADCK 383 chicken
XP_003216275 308 gpSNRPLLVLSCISDAEMKRi-----------PCVYVAHQLQLNLLGQPWLIQDTEAaSLAGLLDGIHWLLKQTEHR 373 green anole
XP_003446193 318 gsTSKPLLVLSCISREQPETvrtpstrsmcrtPCVDMAKRLGLPHLPNPWMVQDTVAeSLSGLLDGISWLLRCSGVK 394 Nile tilapia
EGD82955     296 --TCAPLVVWNCSSSATPRRa-----------SAVQAAEVLRLPSQPRVWRVEDVCVeNFAGPISRTARWLAPSPAP 359 Salpingoeca sp. AT...
NP_001121213 318 gpLKRPLLVLSCIAQPGNKRi-----------PCVYMAHELGLNKLQRPWMVQNTEAsTLSGLLDGIAWILNEVGKK 383 African clawed frog
AAH48098     319 gsSGRPLLVLSCISQGDVKRm-----------PCFYLAHELHLNLLNHPWLVQDTEAeTLTGFLNGIEWILEEVESK 384 human

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