1WYZ


Conserved Protein Domain Family
RsmI_like

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cd11649: RsmI_like 
Click on image for an interactive view with Cn3D
uncharacterized subfamily of the tetrapyrrole methylase family similar to Ribosomal RNA small subunit methyltransferase I (RsmI)
RsmI, also known as rRNA (cytidine-2'-O-)-methyltransferase, is an S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent methyltransferase responsible for the 2'-O-methylation of cytidine 1402 (C1402) at the P site of bacterial 16S rRNA. Another S-AdoMet-dependent methyltransferase, RsmH (not included in this family), is responsible for N4-methylation at C1402. These methylation reactions may occur at a late step during 30S assembly in the cell. The dimethyl modification is believed to be conserved in bacteria, may play a role in fine-tuning the shape and functions of the P-site to increase the translation fidelity, and has been shown for Staphylococcus aureus, to contribute to virulence in host animals by conferring resistance to oxidative stress.
Statistics
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PSSM-Id: 381176
Aligned: 165 rows
Threshold Bit Score: 216.912
Created: 4-Feb-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 39 residues -Click on image for an interactive view with Cn3D
Feature 1:homodimer interface [polypeptide binding site]
Evidence:
  • Structure:1WYZ; Bacteroides thetaiotaomicron putative tetrapyrrole methylase similar to RsmI, homodimer interface, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #                #####                                                        
1WYZ_A         5 LYLLPVTLGDtpl----eqVLPSYNTEIIRGIRHFIVEDVRSARRFLKkvdre---------ididSLTFYPLNKHTspe 71  Bacteroides the...
EDZ64671       8 LYVIPTPLNEdl-----ddFYTLKQKERVNHIQHFVVENKKPARNSLKklels---------tplqELKLHENNKNTq-l 72  beta proteobact...
OGH56330       9 LYLIPTALGPagd----agCVDERVREIVRSLDGLVAESRKGALLFLRtagsm---------drsgTMPIRLLNEHSrpa 75  Candidatus Lind...
KRO78242      11 LFLIPTSLDQdag----qeFLIHEQKRQLAHLSHFIVENEKPARKMLKklgle---------kslqELILFPNTQKTdql 77  Methylophilales...
KPK32479       6 LILLPNLLGRdsk----keYFPIILKEKINCLDGLIAEDEKNARRYLKnflss---------ektdNFLIKILNKKTk-- 70  Chlamydiae bact...
KKP37262      10 VYLVPMFFGGfed---ilnNIPFGLKGILGELDGVVAENARTVKSRLQmmvdsfnkfgdmkvtikeNLKVLQWDEHSrkk 86  Candidatus Pere...
PIP89771      28 LILVPTPIDEent---ldsATLAMINDGIKAGAKFAIEDLKPGRRRWLrfgl----------preqIDEFVLYNEHTrea 94  Bdellovibrional...
OFZ37313       8 LTLIPTPIDEetpldsaarTLLLSAFEKEREKSIFAIEDIRPGRRRWLrfgl----------preaVDNLVQYNEHTrek 77  Bdellovibrional...
WP_102243448   7 LTLIPTPLSEegeleprafRLLNEAATNERENSVFVIEDLKPGRRRWLgfkl----------precVESFVLYNEHTaqt 76  Bacteriovorax s...
RLA64744       2 LTLVPTPIDEenp---leeTALNLLKSACEKGDLVAIEDLKPGRRRWIrwgl----------premVDDLILYNEHTaka 68  Epsilonproteoba...
Feature 1                                   #  #  ##  #     ########  ##  ####   #######         
1WYZ_A        72 DISGYLKPLagGASXGVISEAGCPAVADPGADVVAiAQRQKLKVIPLVGPSSIILSVXASGFNGQSFAFHGYLPIEPGER 151 Bacteroides the...
EDZ64671      73 NYAEVSDILksGSDIGLISDCGLPGVADPGSELVLkCHFDNIKVKTIAQESSILSSLACSGCNGQDFEFVGYLPIDKNKR 152 beta proteobact...
OGH56330      76 DLEDLIEPVaqGGPWGLVSDTGCPAVADPGAGLVRlAHQKGIRVRPLAGPSAVLLALMASGLNGQRFVFHGYLSRIAQDR 155 Candidatus Lind...
KRO78242      78 AIKAMLAPIfnGESMGLLSDSGTPCIADPGNKIVAyAHLHHICIKPLVGPSSIILSLMSSGFNGQNFRFIGYLPKDKTER 157 Methylophilales...
KPK32479      71 DYDDIINSIlkGKTWGLISDIGMPCIADPGSELIFlAHLNNIKVEAISGSSSILLALILSGFSGQKFFFHGYLPIEKFKL 150 Chlamydiae bact...
KKP37262      87 DLDFIFSEIekGGNWGIVSEAGMPCVADPGAEIVRkAHEKNIEVVPFVGPNSILLALVASGLNGQNFCFHGYLSRDQKER 166 Candidatus Pere...
PIP89771      95 AIEELLAHLksGKDVFVMSDAGLPAFCDPGRLLVDrAHQAAVKVSSTPFYNSIALAVALSGYDHDRFVFEGFLPTKDPAR 174 Bdellovibrional...
OFZ37313      78 ESGRLIELMqqGMNVYLMSDGGLPAFCDPGQELVAlCHHHKIKVTASSFANSTLLALALSGFSHKKFVFEGFLSAKKEER 157 Bdellovibrional...
WP_102243448  77 VSKELLAELqkGKNVFLMSDGGLPAFYDPGVELVNlCHQNKIRVTSTPFFNSVSLALALSGFSHRKFWFEGFLPIDSEER 156 Bacteriovorax s...
RLA64744      69 LNRELIQKMksGKELFLMSDGGLPAFCDPGQELVNlCHQEGIKVTSTPFYNSTILALALSGYAHKKFIFEGFLPAKKDER 148 Epsilonproteoba...
Feature 1                       #                                        # # ####                
1WYZ_A       152 AKKLKTLEQrvyaesQTQLFIETPYRNHKXIEDILQNCRPq----TKLCIAANITCEGEFIQTRTVKDWKGhip------ 221 Bacteroides the...
EDZ64671     153 KKYLCNLAVeikkskKTFIFIETPHRNLETFQFLLESLSAe----NLVCIAYDINGDSEAILTNSIKGWQKini------ 222 beta proteobact...
OGH56330     156 KKQIKEMAAdckrndRTHLWIETPYRNLAVFDDLIRHVEPs----LHLCLAVDLTLPTEDIRTRTVGGWRAaskp----- 226 Candidatus Lind...
KRO78242     158 NERLVSMQKairntkETQIFIETPYRNNDLLADLVKTLESd----IMLSLSIDLTTPSEQIISQSIDAWRKrvlp----- 228 Methylophilales...
KPK32479     151 KRKIKEIEKacd-ekVTQIFIETPYRNFRLFKFLIEVLKDn----TFLSIAKELETENQLVVTQKISFWKKgcfskkiyg 225 Chlamydiae bact...
KKP37262     167 INELKKMEKm----kGTQIFIETPYRNEAVFKDILDNLNEn----TDVCVALDLGMKSEFVKTLKMREWRRfki------ 232 Candidatus Pere...
PIP89771     175 SERLKEMAKe----kRTMVLMDTPYRLSKCLNELAEVLGP-----REICLALELGMQTEEVIRGSCAKLRSkfd------ 239 Bdellovibrional...
OFZ37313     158 FGELERLCKd----kRTIILMDTPYRLKQLLEDLSLALEKqgqpdRRVFLALDLNAANEALYLGTVEALRAgin------ 227 Bdellovibrional...
WP_102243448 157 AKAIKNILNl----kTTAIVMDTPYRLKRVLEEFQSAWGSs---kKKLFVAMDLNAETEELQRGTPKELLNvin------ 223 Bacteriovorax s...
RLA64744     149 EKCLKQVLQn----lQTIILMDTPYRLKALLQDLDKLAPK-----REIFLGVDLNSKEEALTRGLPKNILKkle------ 213 Epsilonproteoba...
Feature 1                      
1WYZ_A       222 --elsKIPCIFLLY 233 Bacteroides thetaiotaomicron VPI-5482
EDZ64671     223 --efeKKPCIFLVN 234 beta proteobacterium KB13
OGH56330     227 --dlkDRPAVFLLG 238 Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27
KRO78242     229 --dinKKLCIFLLN 240 Methylophilales bacterium BACL14 MAG-120910-bin43
KPK32479     226 keyfhKKKMVFLIS 239 Chlamydiae bacterium SM23_39
KKP37262     233 --dlkKRLGVFLVG 244 Candidatus Peregrinibacteria bacterium GW2011_GWA2_33_10
PIP89771     240 ---gqKRPFVLVVS 250 Bdellovibrionales bacterium CG22_combo_CG10-13_8_21_14_all_38_13
OFZ37313     228 ---yeKREFILVLD 238 Bdellovibrionales bacterium RIFOXYB1_FULL_39_21
WP_102243448 224 ---dvKREFVLIVS 234 Bacteriovorax stolpii
RLA64744     214 ---nlKREFVLVIS 224 Epsilonproteobacteria bacterium

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