1VLI,3G8R,1WVO,1XUU


Conserved Protein Domain Family
SAF_NeuB_like

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cd11615: SAF_NeuB_like 
Click on image for an interactive view with Cn3D
C-terminal SAF domain of sialic acid synthetase
Sialic acid synthetase (N-acetylneuraminate synthase or N-acetylneuraminate-9-phosphate synthase) catalyzes the condensation of phosphoenolpyruvate with N-acetylmannosamine (ManNAc, in bacteria) or N-acetylmannosamine-6-phosphate (ManNAc-6P, in mammals), to yield N-acetylneuramic acid (NeuNAc) or N-acetylneuramic acid-9-phosphate (NeuNAc-9P), respectively. The N-terminal NeuB domain, a TIM-barrel-like structure, contains the catalytic site, the function of the SAF domain is not as clear. It may participate in domain-swapped dimerization and play a role in binding the substrate, in either domain-swapped dimers or by directly interacting with the N-terminal domain. Also included in the family are PEP-sugar pyruvyltransferases known as spore coat polysaccharide biosynthesis proteins (SpsE).
Statistics
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PSSM-Id: 212160
Aligned: 361 rows
Threshold Bit Score: 40.0162
Created: 21-Feb-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putativeNeuB binding
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1: putative substrate binding site [chemical binding site], 1 residue position
Conserved feature residue pattern:RClick to see conserved feature residue pattern help
Evidence:
  • Comment:residue side chains at these positions may participate in binding the substrate

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                #                                      
1VLI_A       315 YRGIFTTAPIQKGEAFSEDNIAVLRpgqkpqGLHPRFFEl-lTSGVRAVRDIPADTGIVWDDI 376 Bacillus subtilis
3G8R_A       279 RRGVFATRPVAAGEALTADNVSFAFppv-egQLTANEWSk--YVRYTAKTPIAADAPVXAADL 338 Chromobacterium violaceum ATCC 1...
YP_616622    292 RRSAFALTDINRGDRLDATTIAFLRpg---dGIGPERADw--LFARTAARDIARGSKLCEDDI 349 Sphingopyxis alaskensis RB2256
YP_004061248 290 YMTLFAKRTIRKGDPIPPEAISILRpgkkqpGLPPKYLKlfsDHTITAKKEIACEDPITWDAI 352 Sulfuricurvum kujiense DSM 16994
YP_429617    280 RRSLVAARDIAAGEIITDSCLTAKRpg---tGIPPNLWDv--VVGRQARRDIAAGSILSWDMI 337 Moorella thermoacetica ATCC 39073
BAL08995     401 GKSIFAIDAIAAGTTITREMIEIRSpg---qGLSPNRIDe--VIGRKAPRAIPAQTPLYPSDI 458 Bradyrhizobium japonicum USDA 6
YP_002974288 283 GKSIIAYSDIRVGEELTLDKLSGRIfn--thYIPVRESNk--VLGKTVKRDIAKGEPIQYSDF 341 Rhizobium leguminosarum bv. trif...
CAM76630     280 RKSLYAARDIAAGQIISDDDIAIRRpa---dGIHPHHLDl--VIGRTARQAIACGALISWDMV 337 Magnetospirillum gryphiswaldense...
YP_002422713 292 RRSLFAARDIEAGGVIGRSDLVALRpg---sGISPDRRDl--VLGRRARTAIAAGTMLSIGDV 349 Methylobacterium chloromethanicu...
YP_004463575 291 RRSIFAKVDIPNGTVITADMLAILRpg---iGLKPKYIDi--VIGRAAKMDIKKNDPITWDKI 348 Mahella australiensis 50-1 BON

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