3TEK


Conserved Protein Domain Family
ThermoDBP

?
cd11603: ThermoDBP 
Click on image for an interactive view with Cn3D
Thermoproteales single-stranded DNA-binding (SSB) domain
ThermoDBP is a SSB protein of the Thermoproteales. SSB proteins are essential for the genome maintenance of all known cellular organisms. Many SSBs contain an OB fold domain, albeit with low sequence conservation and OB fold-containing SSB proteins have been detected in all three domains of life. However, one group of Crenarchaea, the Thermoproteales, lack SSB encoding genes. The Thermoproteales SSB protein, ThermoDBP, lacks the OB fold and binds specifically to ssDNA with low sequence specificity. Its three-dimensional structure resembles that of the Hut operon positive regulatory protein HutP.
Statistics
?
PSSM-Id: 211428
Aligned: 5 rows
Threshold Bit Score: 236.267
Created: 24-Feb-2012
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
 
putative dimer
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:putative dimer interface [polypeptide binding site]
Evidence:
  • Structure:3TEK: Thermoproteus tenax ThermoDBP homodimer interface; contacts at 4.0A

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1               # ###      #                                                             
3TEK_A         9 ERGEVRSELITKGEKKLVLIRWNTGKTSAGRLFGRygpgGRPEFFKLLFGAVAGSLREQFGp-DGENIFNRIRDSEKFRE 87  Thermoproteus t...
NP_559881      5 ERTVERAHLEEREGRQVLVIRWNTGKTSAGRLFGRygagGRPDFFRLLFGALAGSLRGKFGp-QGEELFNKIRDSDEFKK 83  Pyrobaculum aer...
YP_004244085  17 ERGGVSAELVKGNILKIKWVTGKTSAARLFGKYGRe---GRPDFFRLLFGAIGGSLRSQFPedKANELFNNIRNSQGFKD 93  Vulcanisaeta mo...
YP_001541442  12 ERESVTSELVTEAGKRIIKIKLSTGKTSAGKLFGKhgrgGRPDFFRIVFGAVANGLRTSLGneEGEAKFNELRNKSEFKK 91  Caldivirga maqu...
YP_003902380  14 EEIERGGATAELVKGNILKIKWVTGKTSAARLFGKygreGRPDFFRLLFGAIGGSLRSQFPedKANELFNNIRNSQGFKD 93  Vulcanisaeta di...
Feature 1                  #    #                          ########           
3TEK_A        88 TSRELFDGLKKWFFEEAVPRYnLERGDIFMISTELVLDPDTGELLWNRDKTQLIYWIRSDR 148 Thermoproteus tenax
NP_559881     84 SSKEMFDAIKEWFFNEQAPKYgLDKGDIFMIITEIELDINTGELRWRKDKTELYYWVRSDR 144 Pyrobaculum aerophilum str. IM2
YP_004244085  94 SLNEVFESMKRWFFDEVVPKYqLERGDVFVVSTTLELNINTGELKWNKESTQVIYWIRSDR 154 Vulcanisaeta moutnovskia 768-28
YP_001541442  92 SLNQVFNNIKDWFFNEAIKQYnIGKGDVFAIITELDLDLETGELKWVREGSQVIYWVRSDK 152 Caldivirga maquilingensis IC-167
YP_003902380  94 SLDEVFESMKRWFFDEIVPKYkLERGDVFVISTTLELNIETGELKWDKGSTQVIYWVRSDR 154 Vulcanisaeta distributa DSM 14429

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap