3SQI,4ACO,3T79


Conserved Protein Domain Family
Ndc10

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cd11602: Ndc10 
Click on image for an interactive view with Cn3D
Ndc10 component of the yeast centromere-binding factor 3
Ndc10 is a multidomain protein conserved in Saccharomycotina that interacts with kinetochore components. This model characterizes the majority of the protein; some family members may have an additional C-terminal domain that is homologous to transcriptional activators (GCR1_C). Ndc10 is part of the centromere-binding factor 3 (CBF3) complex in budding yeast. The CBF3 complex contains four essential proteins, Ndc10, Cep3, Ctf13, and Skp1. CBF3/Ndc10 is essential for the recruitment of the centromeric nucleosome and formation of the kinetochore. The Kinetochore is the large, multiprotein assembly that serves to connect condensed sister chromatids to the mitotic spindle. Ndc10 forms a dimer and it has non-sequence-specific DNA binding activity via the DNA backbone. Ndc10 also plays an important role in the coordination of cell division. It has been noted that the protein bears resemblance to the tyrosine recombinases (type IB topoisomerase/lambda-integrase).
Statistics
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PSSM-Id: 211427
Aligned: 11 rows
Threshold Bit Score: 463.011
Created: 24-Feb-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA bindingdimer interface
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:3SQI: Kluveromyces lactis Ndc10 binds DNA double-helix, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
3SQI_A          3 KLDSLLKELPTRTAHLYRSIWHKYTEWLKTMPDLtg---------------aDLKLFLSQKYIVKYIASHdd-------- 59   Kluyveromyces...
4ACO_A         29 RFQELVDSLKPRTAHQYKTYYTKYIQWCQLNQIIptpedn------svnsvpYKDLPISAELIHWFLLDTlitddkpgek 102  baker's yeast
3T79_A          3 KLDSLLKELPTRTAHLYRSIWHKYTEWLKTMPDLtg---------------aDLKLFLSQKYIVKYIASHdd-------- 59   Kluyveromyces...
XP_447688       7 EIRKLMESVAPIKVHQYKSYYMKYIEWCEQKELLsfesn---------ssipYENVPLLPQLVHLFLLECvikwp----- 72   Candida glabr...
XP_003681367    6 QVRKLVDSVSPRTAHQYKSYGDKYIRWLRDTGILqneda---------gevlYRDLPLSAQLVHWFLIDTlvrnggn--- 73   Torulaspora d...
XP_001643026   21 QVTNLMGSLSARTANQYKSYYTKYIKWCHSKGFIldted---------tefvYKHLPVSSNLFHWFLMDDfitntdaads 91   Vanderwaltozy...
XP_003685402   11 KAQQLFDALTERTKHQYKSYYGRYIKWCEENKLIsksln---------eneiFEKLPLSSMLFHCFLLDLyiskdsndnn 81   Tetrapisispor...
XP_002555136   14 HIKALVDTLAPRTAHQYKLYHTKFIQWCRDNKLLrrdpg---------adhpYRDIVVTATLVHCFVLSQyvcvs----- 79   Lachancea the...
XP_002498831    3 EIRKLVDTLSPRTAHQYRSYCKRYVEWLVQKGIVeqelree-----tldaeqYAKLPISTQLVHWHLIDTmgt------- 70   Zygosaccharom...
XP_003676504    8 RIQSLLSSVSPRTLFQYKTNYSRYISWCESKQLIpssenin-----ddqeplFETLPISARLFHCFIIDAyfgsntnvsq 82   Naumovozyma c...
XP_003672087    9 NVQFLLGSISPKIQLQYKYHFAQYINWCRNRNLLdvsqqqqqqqqpvtdediYRRLPISCFLIHWFIIDTfiinvpt--- 85   Naumovozyma d...
Feature 1                                                                                         
3SQI_A         60 ---------------------iAKDPLPTCDAMIWFSRALDIENNdv----------lVLQQRLYGLVKLLEFDy----- 103  Kluyveromyces...
4ACO_A        103 ree------tedldeeeensfkIATLKKIIGSLNFLSKLCKVHENpn---------anIDTKYLESVTKLHTHWidsqka 167  baker's yeast
3T79_A         60 ---------------------iAKDPLPTCDAMIWFSRALDIENNdv----------lVLQQRLYGLVKLLEFDy----- 103  Kluyveromyces...
XP_447688      73 -----------------ivasdVNELQIYIESFRFLKKLCDIHSEvdp--------nsEFDDYITDVLELHRRWdsllk- 126  Candida glabr...
XP_003681367   74 ---------------etedefkIPTLKKVISGLKFLHKLCLIHGNkl----------vFDEKYLENVIKLHSNWatv--- 125  Torulaspora d...
XP_001643026   92 hsti-----essnldhesvslkIGTLKKIVSSLKFLAKICSIHKEgte-------dvhIDEKYLESIIRSHTYWynelta 159  Vanderwaltozy...
XP_003685402   82 dkittt-nddkenliaenigvkLSTLKKIISSLKFLVRVCTVYNNenv--------skVDDKYLENITKLHSSWydfien 152  Tetrapisispor...
XP_002555136   80 -----------------dsqfsASVLRKMISAFKFLHRVCCAYEPdyp--------yeLDHDYLEAVARLHVSAsa---- 130  Lachancea the...
XP_002498831   71 --------------------gsLPSIRKCISSLKFLDKLCSIHREvdastgdtaavtkLDEKYLENITRVREVReqe--- 127  Zygosaccharom...
XP_003676504   83 nkdeadfeqltismtesngatnIKLLKKTIHSLKFLFKLCQIYNEql---------ppLDESYLHGIIDLHTFWnsllnd 153  Naumovozyma c...
XP_003672087   86 ---------------snsklptSEEIEKIIKSLKFLDKLCHVAKGniey-----tidpRVESYLNSIPSIYSQYehmpki 145  Naumovozyma d...
Feature 1                                                     ##                                  
3SQI_A        104 --------------------SNVIAILQKISINLWNPSTDsLQSKHFKTCQDKLKLLLDFQWKFNTNVS--------FED 155  Kluyveromyces...
4ACO_A        168 itt---------netnntntQVLCPPLLKVSLNLWNPETNhLSEKFFKTCSEKLRFLVDFQLRSYLNLS--------FEE 230  baker's yeast
3T79_A        104 --------------------SNVIAILQKISINLWNPSTDsLQSKHFKTCQDKLKLLLDFQWKFNTNVS--------FED 155  Kluyveromyces...
XP_447688     127 ----------------desqSSQLNKMATLSINMWNSNTQeLSDKYFKTSMEKLRFLTDYHFYTLLNWP--------YKE 182  Candida glabr...
XP_003681367  126 -----------------rsqKQTTLPIVKVSLNLWNSHTEsLSEKFFKTSLEKLRFLVDFHFRVYTNLS--------YEQ 180  Torulaspora d...
XP_001643026  160 f-------------nntinmTNTHPAILKVSINLWNPQTLnLSDKIFKTGLEKSRFLVDFHFTNYLHLN--------YSK 218  Vanderwaltozy...
XP_003685402  153 i-------------nntinlTNTYPPLLRVSMNMWNPQTInLNEKVFKTTSEKLKFLIDFHFTNYLNLS--------YSE 211  Tetrapisispor...
XP_002555136  131 -------------------eNPPFSPLHLVSVNMWTPHSNrLSEKYFKGGLERLRFLVDFHVQQYWHLP--------FAD 183  Lachancea the...
XP_002498831  128 -----------------eeqGQLAQNLHIISANLWNPHSQ-LPEKYFRNCFEQLRFLVDFQWRLYTKMS--------YMQ 181  Zygosaccharom...
XP_003676504  154 gskflieghdgtfkinqnltKSPTFQLLKISMNLWNPQTTnLSKIYFNSALKKHSLLLDFYFSNILRLS--------YSQ 225  Naumovozyma c...
XP_003672087  146 ftls-------dnddnnnnnNNKVYKLLKTAVNLWNPNTThLKNNEPRIKLQFLLTLQLSTMYNITYDEqfdlllsnFQT 218  Naumovozyma d...
Feature 1                                                                                         
3SQI_A        156 RTTVSL-----KDLQCILDden--------gkCGLAHSSk-------------pNFVLVPNfQSPFTCPIFTMAVYYYLR 209  Kluyveromyces...
4ACO_A        231 RSKIRF-----GSLKLGKRd-----------rDAIIYHKvthsaekkdtpghhqLLALLPQ-DCPFICPQTTLAAYLYLR 293  baker's yeast
3T79_A        156 RTTVSL-----KDLQCILDden--------gkCGLAHSSk-------------pNFVLVPNfQSPFTCPIFTMAVYYYLR 209  Kluyveromyces...
XP_447688     183 RSKLKL-----SHLKVHNVend-------ensLNAYRLIiind-------dgavQGTVIPH-DCPLICPITTLAAYLYLR 242  Candida glabr...
XP_003681367  181 RSKIKL-----SELHGEVGvlamdq--kvwssLQVYMPNstrqv------kshmPLSIRSQ-ELPFLCPLTSLASYLYLR 246  Torulaspora d...
XP_001643026  219 RSIIKL-----FQLNGNKEknc--------itLDQYDETsrt----------hsPLLLLPQ-SCPFLCPITSLATYLYLR 274  Vanderwaltozy...
XP_003685402  212 RAELKL-----SDLTTNNEkn----------iIEINKPNdps---------qmnPMVLLPQ-DCPFLCPLTSLAASLFLR 266  Tetrapisispor...
XP_002555136  184 RARLKL-----GDLRFAADpg----------mLHVVRQGqhgada----petvqQLALLPQ-RVPWICPLVSLAAYLYLR 243  Lachancea the...
XP_002498831  182 RSRIRI-----AELVGHADgggisveldtwsqLGEYVNGvepql------rsrqPVIVVSH-ANPLVCPLVSLASYFFLR 249  Zygosaccharom...
XP_003676504  226 KSLLTL-----NKLKVHFQsastq---fpllsLDLYSTTrndv--------thqPINIVAQ-DCPIVCPINNLACYLFLK 288  Naumovozyma c...
XP_003672087  219 RPMIESsssssSSSSPSKQlp---------viYGTYTRNntskkk----vnglkTLEIIPQ-NCPFICPIMTLATYYFLR 284  Naumovozyma d...
Feature 1                                                        ###    ## ##   #             # ##
3SQI_A        210 FHGVKKYYKGDGYQils---------------------qleHIPIIRGKSLDQYPRELTLGNWYPTIFKYCQL--PYTKK 266  Kluyveromyces...
4ACO_A        294 FYGIPSVSKGDGFPnlnade---------------ngsllqDIPILRGKSLTTYPREETFSNYYTTVFRYCHL--PYKRR 356  baker's yeast
3T79_A        210 FHGVKKYYKGDGYQils---------------------qleHIPIIRGKSLDQYPRELTLGNWYPTIFKYCQL--PYTKK 266  Kluyveromyces...
XP_447688     243 FYGVKPIYRGDGFPelt---------------------kdfDLPLIRGKSLKDYPREETLGNYYSSAFKYCSL--EYKRR 299  Candida glabr...
XP_003681367  247 FYGISSVTKGDGFPdllasdq--------------ddlywkDLPLIRGKSLTDYPREETMSNYYSAVFRYCHL--PYKRR 310  Torulaspora d...
XP_001643026  275 FYGIRNVYKGDGFPdlsntikqskmdyssvtklsanlihwlDLPLIRGKSPLDYPKDETMSNYYSIVFRYCHL--PYKRR 352  Vanderwaltozy...
XP_003685402  267 FYGIKNVYKGDGFPdvskiskpsqsdydkeaklsanvvhwqDLPLIRGKSPLDYPKDVTMSSYYNMIFRYCHL--PYKRR 344  Tetrapisispor...
XP_002555136  244 FYGAPKAYKGDGFPdllga------------------dewaFLPMVRGKSLDKYPREETMTNYYAHVFRHCHL--PYKRR 303  Lachancea the...
XP_002498831  250 FHDGGGFPELRDANgs-----------------------wrEMPIVRGKSPGDYPREETLGNYYAAVFRYCRL--NYKRR 304  Zygosaccharom...
XP_003676504  289 FYGENGIGFPKDLEtq-----------------------ipLLSKNNSDKALDYPDELYLNSSYLTIYNYCNL--SYDKD 343  Naumovozyma c...
XP_003672087  285 FYILKDYKFPMTET---------------------------DIEHFPFLHEEHADDEEVWQNSLTQISEYCQFtsPLSSD 337  Naumovozyma d...
Feature 1                                                                                         
3SQI_A        267 HWFQVNQe------wPQFPDFSDSSENTSTLa---------eSDSENTIGIPDFYIEKMNRTklqpcpq----------- 320  Kluyveromyces...
4ACO_A        357 EYFNKCN--------LVYPTWDEDTFRTFFNeenhgnwleqpEAFAFPDKIPFDFKKIMNFKspytsystnakkdpfppp 428  baker's yeast
3T79_A        267 HWFQVNQe------wPQFPDFSDSSENTSTLa---------eSDSENTIGIPDFYIEKMNRTklqpcpq----------- 320  Kluyveromyces...
XP_447688     300 VYLHGSSdekngvknIRYPDTSNPAYKEFLTdypnn--eemkFDRLFPAHIPLDYERIFNYSnydgvqdgltipeitelp 377  Candida glabr...
XP_003681367  311 EYFNKST--------LEYPTWSHQSFTDFFDkyp------saKRTAFQHEVPFDYDRIMNLRslnetkenealsalpesl 376  Torulaspora d...
XP_001643026  353 EYFQKTR--------VEFPTWTDEEFNEFDNilk------esMSTAYKYKVPYDFAKILNLKspfipydnvdnsltnesm 418  Vanderwaltozy...
XP_003685402  345 EYFQDRQ--------EVFPKWNKQEFEEESHqye------siAKQFFKYNVPHDFITILNHKspynsfeslsknftneeq 410  Tetrapisispor...
XP_002555136  304 EYFYNKSvd-----yCQYPEIRRTELDQLQEiap------aqQRELFPHLIPLDFLRHMNHFpvyeppsenhyadlanvp 372  Lachancea the...
XP_002498831  305 EWFGQSK--------LQYPSWRPEEYEFFKRyq-------peLQEAFPMNVPRDFVECFNLGvgrgtvddkivggrrdl- 368  Zygosaccharom...
XP_003676504  344 DQADDDG--------IKFPTWDNEEYATFFEesn------lvSKSAFNYNVPLDYSNILNLRypgaatenyfkvrrrpsd 409  Naumovozyma c...
XP_003672087  338 VESNDSNn------iYFTPDILRTVKSKFPEa----------FDVAFKDDIPLDLNYLMNLRnpihelnyrtnetnnnty 401  Naumovozyma d...
Feature 1                                                                                         
3SQI_A        321 --------------------------vhvhlfPTDLPPDIQAVFDLLNSVLVTSLPLLYRVFPTHDIFLDPSLKTPQNIA 374  Kluyveromyces...
4ACO_A        429 kd-----------llvqifpeideykrhdyegLSQNSRDFLDLMEVLRERFLSNLPWIYKFFPNHDIFQDPIFGNSDFQS 497  baker's yeast
3T79_A        321 --------------------------vhvhlfPTDLPPDIQAVFDLLNSVLVTSLPLLYRVFPTHDIFLDPSLKTPQNIA 374  Kluyveromyces...
XP_447688     378 pn----------dllvqvfpeiekykresyniLTTKSKEFLKVLEVLRNVLVINLPWIYRYFPDHEIFSDQTSIFQNSDF 447  Candida glabr...
XP_003681367  377 ---------------lvqifpeveqykrevdqLSPEAKAFIQTMENLRKRFLYNLPWIHEIFPQHDLFKDPIFQNSDFQS 441  Torulaspora d...
XP_001643026  419 lp----------aslldqlfpeidqykrhsniLSKEAKNFLNLMETLRNALLKNLPWIFHFFPHHDIFKDSLFSNSDFQS 488  Vanderwaltozy...
XP_003685402  411 lp----------shllvqlfpeigyfknsadnLNKEALEFIKVIEALRNTLLKNLPYLYHFFPHHDLFNDTILTSPEFQK 480  Tetrapisispor...
XP_002555136  373 k------------sllvqvfpeieeykrssipLGEQAQHFIDALQLLRSALVSALPLFYHFFPEHDLFKDPMFQNAEFQG 440  Lachancea the...
XP_002498831  369 ----------------lvqlfpeiesykrhggLDQDAQRFVDLIEVLRIHLLRALPVLYRLFPDHDLFKTDTLSKPDFKS 432  Zygosaccharom...
XP_003676504  410 s-------------ilkkffpeldeirensttLSPEMEDLITLLETLRLVFVSNLPILFNLFPKHEIFQIENFNDDECKK 476  Naumovozyma c...
XP_003672087  402 fsirkvppngmlfqlfpeieilkgklegsassPPLKLQNFIQLMEALRLIFVSNLPFIYEFFPDHDIFKYPVLQREEFRI 481  Naumovozyma d...
Feature 1                                                 
3SQI_A        375 FLTGTLpld-----------------iesQEHLLAQLIDK 397  Kluyveromyces lactis NRRL Y-1140
4ACO_A        498 YFNDKTihskgspilsfdilpgfnkiyknKTNFYSLLIER 537  baker's yeast
3T79_A        375 FLTGTLpld-----------------iesQEHLLAQLIDK 397  Kluyveromyces lactis NRRL Y-1140
XP_447688     448 VSYFNEri-------------------alISNNDSTIDIN 468  Candida glabrata CBS 138
XP_003681367  442 YFHQVVg----------------------NKWENDQLPFN 459  Torulaspora delbrueckii
XP_001643026  489 YFQEVIgn-------------------svKQNPMNQLPFD 509  Vanderwaltozyma polyspora DSM 70294
XP_003685402  481 YFKEVIgk--------------------vQISNGVKLPFE 500  Tetrapisispora phaffii CBS 4417
XP_002555136  441 YFHQKIe----------------------QLRATDQLQSY 458  Lachancea thermotolerans CBS 6340
XP_002498831  433 FYADVEt----------------------NDYGMGELVLG 450  Zygosaccharomyces rouxii CBS 732
XP_003676504  477 YISTLP-----------------------TSNGSPFKIFP 493  Naumovozyma castellii CBS 4309
XP_003672087  482 YLNSAKils-----------------sgnNNNSEDTLPFR 504  Naumovozyma dairenensis CBS 421

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