3LHL,3PZL


Conserved Protein Domain Family
Agmatinase-like_2

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cd11593: Agmatinase-like_2 
Click on image for an interactive view with Cn3D
Agmatinase and related proteins
This family includes known and predicted bacterial and archaeal agmatinase (agmatine ureohydrolase; AUH; SpeB; EC=3.5.3.11), a binuclear manganese metalloenzyme that belongs to the ureohydrolase superfamily. It is a key enzyme in the synthesis of polyamine putrescine; it catalyzes hydrolysis of agmatine to yield urea and putrescine, the precursor for biosynthesis of higher polyamines, spermidine, and spermine. As compared to E. coli where two paths to putrescine exist, via decarboxylation of an amino acid, ornithine or arginine, a single path is found in Bacillus subtilis, where polyamine synthesis starts with agmatine; the speE and speB encode spermidine synthase and agmatinase, respectively. The level of agmatinase synthesis is very low, allowing strict control on the synthesis of putrescine and therefore, of all polyamines, consistent with polyamine levels in the cell. This subfamily belongs to the ureohydrolase superfamily, which includes arginase, agmatinase, proclavaminate amidinohydrolase, and formiminoglutamase.
Statistics
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PSSM-Id: 212539
Aligned: 149 rows
Threshold Bit Score: 257.404
Created: 19-Dec-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative activeMn binding site
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:putative active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
3LHL_A        10 LIVFGVGFDGTTSNRPGARFASSSXRKEFYGLETYspfldldleDYNICDYGDLeisv---------------------- 67  Clostridium dif...
EGJ31791      30 IVFLPVPWDVTTSYREGAANGPQGILDASVQLDWYdf------dVPQAWEIRCGtipinsaiqdqnramrliakgiiqy- 102 Lyngbya majuscu...
YP_003122746  51 LVLLPVPWEVTVSYTHGTARGPEQIFKASLQVDLYdt------dVKDGWKNGFFmrdidkqlllrsdylrkeaelylkfl 124 Chitinophaga pi...
NP_486350     32 LIVFAVPWEVTVSYGAGTANGPQRILDASVQLDLFdf------dHPDGWKQGIFlveipqemieknnyyrdlaaqiierl 105 Nostoc sp. PCC ...
CAL44270      34 IIIIPVPWEVTVSYGAGTSEGPEAILEASFQVDLQhq------eFPELWKLGMYydqvpahwkknsdkyksfaqpiieal 107 Flavobacterium ...
ADR23519      34 LILIPVPWEVTVSYEAGTAQGPQHILEASTQVDLYqk------dIIDAWKMGIQmlpinqdlltksnkhrimaeeyig-- 105 Flexibacter tra...
AEL27302      36 MVILPVPWEVTVTYREGTINGPEAILKASTQVDLFqe------dIIDAWKMGITmlpindllksqgvqqrsianaydqwl 109 Cyclobacterium ...
EFR58767      30 LVIVSAPWDVTVSYGAGTAYAPDAIIEASTQLDFHep------lAPGAWRRGIAtadvdyslldesqrlrgdaakvidh- 102 Alistipes sp. HGB5
EHB93202      33 LVLLPVPWEVTASYGGGTASAPDAILDASMQVDLYdi------hYPGGWERGIGtlemddtlqprsarlrqealrvmsh- 105 Alistipes indis...
AEA45611      31 IVIIPVPWDATASYGKGTSDGPKAILDASTQLDFYhh------qLPEAWNTQVFmtpisdemkqindqmcidtvqyigfl 104 Fluviicola taff...
Feature 1                                                          #                      # ###  
3LHL_A        68 --------------------gsteQVLKEIYQETYKIVRdskVPFXIGGEHLVTLPAFKAVHekyndIYVIHFDAHTDLR 127 Clostridium dif...
EGJ31791     103 leaggnvdddaiakqlaivnqacaGLNNWVYTQALELLEqgkLVAIVGGDHSVPLGLMQALTqqhdeYGILQIDAHADLR 182 Lyngbya majuscu...
YP_003122746 125 teggdvceneflkktlidvntgtvAMNDWVYRQTKDLLNsgkLVALVGGDHSTPLGFFKAIGekkgdFGILQIDAHCDLR 204 Chitinophaga pi...
NP_486350    106 aqgklltdtpdltpvlteinqasqQVNQWLFTQCQAAMSqgkQVAVIGGDHSSPLGYFQALAakysnFGILHIDAHADLR 185 Nostoc sp. PCC ...
CAL44270     108 engeiiesvpvlkadldkinkacaELHTEVKERVLHWIKkgkKVVLLGGDHSTPLGYYQALAtihddFGILHLDAHMDLR 187 Flavobacterium ...
ADR23519     106 llesgeensdkgknllkevnsvcsEMVEWVKTESLKQLDkhkLLGLVGGDHSTPLGAVQALAtnhetFGVLQIDAHMDFR 185 Flexibacter tra...
AEL27302     110 eagepetvrnlyeksperinaaceKMNDWVYQHARLYIEqgkIIGLLGGDHSTPLGLIRAMAvkhssFGILQIDAHADLR 189 Cyclobacterium ...
EFR58767     103 legggspeddyvvrkicrvnegcaAMNANIGAQAARWLDagkLVGLVGGDHSTPYGLIRALGerhaeFGILHIDAHCDLR 182 Alistipes sp. HGB5
EHB93202     106 legggspeselmqrrlrrineasaELNDYVYGEAKRWLDagkKVGVVGGDHSVPLGLIRAVAgrypgVGILHVDAHADLR 185 Alistipes indis...
AEA45611     105 edggeldenspynevlekvnatseLLRNNLKERATKLLAenkIVAVLGGEHSTPLGLMEALNdqgepFGILQIDAHADLR 184 Fluviicola taff...
Feature 1                 ##                                                                     
3LHL_A       128 EEYnNSKNSHATVIKRIWDivg-dnkIFQFGIRSGTKEEFKFateekhTYXEIGgi-----------------dTFENIV 189 Clostridium dif...
EGJ31791     183 QAYeGFTYSHASIMYNALTlpq-inrLVQVGIRDVCEEEMSWans-drRIVVFDdwqlkaktye-gitwaaqcqEIIANL 259 Lyngbya majuscu...
YP_003122746 205 NGYeGFQYSHASIMYNALKevpqltkLVQIGIRDYCEEEVDYinn-snGKVVTFfdkdiktrqyegdtwkticdEIVATL 283 Chitinophaga pi...
NP_486350    186 DAYeGFEFSHASIMFNGLKlpq-iskLVQVGLRDISHDEVRMiee-shGRIVAYydpmikqklygetnwielsrEIVNHL 263 Nostoc sp. PCC ...
CAL44270     188 IAYeGFTYSHASIMYNALQipq-iskIVQVGIRDFCEQEVQIaqs-nrVVVHTDmdmkaqtfe--gktwqqqcdDIIAAL 263 Flavobacterium ...
ADR23519     186 KAYeNFQYSHASISYNMLQtvpqiekMVQVGIRDFCEEEIKFaek-qgERVSVFydddikvgmfegeswtiicdRIIKEL 264 Flexibacter tra...
AEL27302     190 PAYkGLEYSHASIAHNFMKile-vkhLVQVGVRDLCEQEWVYiq--seKRISLYtddqlkeeqylgvnwseickRIIADL 266 Cyclobacterium ...
EFR58767     183 DAYeGFEFSHASIMFNVLRdvpavtkIAQVAVRDFSEREAALaa--ssGRVVLFddlslaaagfrgetwdtqclRIVETL 260 Alistipes sp. HGB5
EHB93202     186 EAYeGFTYSHASIMYNALHeapgvgaLVQVGIRDFCDEELEVar--adERVVQFtdyelaaaqfegetwrtvcdRIVAAL 263 Alistipes indis...
AEA45611     185 EAYeGFQQSHASIMFNVLQschnlqkLVQVGIRDIAHSEVLLsn--sdPRVKTFydwdlkkglfegqtwkeqvsMILNEL 262 Fluviicola taff...
Feature 1                    # #                                           #                     
3LHL_A       190 NxlngkNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIIKnsniNIVGCDIVELSPDYDttGVSTVIACKILRE 269 Clostridium dif...
EGJ31791     260 Pn----KVYISFDIDGLNPAYCPNTGTPVPGGLEFNEAIYLVRSLVkagkTIIGFDLCEVAPGDSgdEWDGNVGARVLYK 335 Lyngbya majuscu...
YP_003122746 284 Pq----QVYISFDIDGLDPKLCPRTGTPVPGGFETEQLYYLFRKIIgsgrKLIGFDLNEVSTSHD--EWDANVGARVLFK 357 Chitinophaga pi...
NP_486350    264 Pe----YVHISFDVDGLDPKLCPNTGTPVPGGLELEQVFCLFRELVnsgrKIIGFDVCEVGDAEWdgNVGARVVYKLANL 339 Nostoc sp. PCC ...
CAL44270     264 Pq----NVTVSFDIDGMYSWYCPNTGTPVPGGFSFEQATYLLSKLAnsgkNIIGFDLVEVAPSEDd-DWDGNVGARMLYH 338 Flavobacterium ...
ADR23519     265 Pn----EVYITFDIDGLRPELCPNTGTPVPGGISYSEIIYLLTRLVkngkKIIGFDLNEVAPGENt-DWNGNVGARILYR 339 Flexibacter tra...
AEL27302     267 Pe----KVYLTIDIDGLLPHLCPNTGTPVPGGLDYQQLMFLIKMLVksgrQIIGFDLVEVAPGESgdEWDAIVGARILYR 342 Cyclobacterium ...
EFR58767     261 Pq----EVYVSFDIDGLSYENCPHTGTPVAGGLGFNQAVWLLDTLVrsgrRIVGFDVVEVTPAREe-RIDAITGARVLWK 335 Alistipes sp. HGB5
EHB93202     264 Pr----QVYVSFDIDGLSPDNCPHTGTPVPGGLSFREAVYLLAAVVesgrEIVGFDLCEVGPSRDg-EWDANVGARVLYK 338 Alistipes indis...
AEA45611     263 Pd----RVYISFDIDGLLPSLCPNTGTPVVGGFELEQINYLFFQLVesgkKIIGFDLNEVSPGKEg-DWDANVGARALWN 337 Fluviicola taff...
Feature 1          
3LHL_A       270 LC 271 Clostridium difficile 630
EGJ31791     336 LA 337 Lyngbya majuscula 3L
YP_003122746 358 LC 359 Chitinophaga pinensis DSM 2588
NP_486350    340 MD 341 Nostoc sp. PCC 7120
CAL44270     339 MC 340 Flavobacterium psychrophilum JIP02/86
ADR23519     340 LC 341 Flexibacter tractuosus DSM 4126
AEL27302     343 VA 344 Cyclobacterium marinum DSM 745
EFR58767     336 LC 337 Alistipes sp. HGB5
EHB93202     339 LC 340 Alistipes indistinctus YIT 12060
AEA45611     338 LV 339 Fluviicola taffensis DSM 16823

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