1WOG


Conserved Protein Domain Family
Agmatinase_like_1

?
cd11589: Agmatinase_like_1 
Click on image for an interactive view with Cn3D
Agmatinase and related proteins
This family includes known and predicted bacterial agmatinase (agmatine ureohydrolase; AUH; SpeB; EC=3.5.3.11), a binuclear manganese metalloenzyme, belonging to the ureohydrolase superfamily. It is a key enzyme in the synthesis of polyamine putrescine; it catalyzes hydrolysis of agmatine to yield urea and putrescine, the precursor for biosynthesis of higher polyamines, spermidine, and spermine. Agmatinase from Deinococcus radiodurans shows approximately 33% of sequence identity to human mitochondrial agmatinase. An analysis of the evolutionary relationship among ureohydrolase superfamily enzymes indicates the pathway involving arginine decarboxylase and agmatinase evolved earlier than the arginase pathway of polyamine.
Statistics
?
PSSM-Id: 212537
Aligned: 22 rows
Threshold Bit Score: 338.427
Created: 19-Dec-2011
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:Inhibition by 1,6-diaminohexane arises from the displacement of the metal-bridging water.
  • Structure:1WOG: Deinococcus radiodurans agmatinase binds two Mn ions and inhibitor 1,6-diaminohexane; contacts at 4A.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1WOG_A        31 VAALGVPFDIALg---fRPGARFAPRALREASlrsvppftg------ldgktrlqgVTFADAGDVILpsl-epqLAHDRI 100 Deinococcus rad...
Q8XPR0        31 IAVLGMPFGTPYsaadfSNDQTNAPAAIRQATdrvarapghydfdidgpllqgrddIRFVDCGDIVPdlaqppgEHYARA 110 Ralstonia solan...
Q165U0        37 VAVLGAPFDGGTq---wRAGARFGPRGVREAStlfsfghagayd-heddatylpadVRIVDMGDADIvht-ateKSHDNI 111 Roseobacter den...
YP_914955     32 IAFLGIPYGSAYtmdevTNDQTRAPTAVRQATdravrlldrydf-diggtlydgrdVRAVDCGDVTGdpv-dpkAHSRNA 109 Paracoccus deni...
Q98MW3        21 AVIFGAGHGSTYpg-kdSSGHALAADAIRAASqddaslvehwdf-dlggplfngkpASCVDAGDISTilh-dnaENRVRI 97  Mesorhizobium loti
ADU69256      32 FAVLGMPYGAAYtpqdyNNDQVRAPTAIRQASdrvirsperydfdidgpllqgrddVRFVDCGDVPAdln-dprGHFVRA 110 Pantoea sp. At-9b
ADB46624      36 IAVLGAPFDLAIq---gRTGCRLGPRGIRLGStrftykkggtydserkefymdtdkWKVVDCGDADYipg-dltGTMANL 111 Acidaminococcus...
YP_002153525  26 FAVLGAPYGVPYgpallHCDASNAPDKVRERSfrygrqighydf-dlqgtlfgdtgATCVDCGNLPGtld--vaRNAAAV 102 Burkholderia ce...
ADH91517      30 IAYLGIPYGESYtfgeiASDQSRGALAMRRATdrilrsierydf-diggplydnrqIRAVDCGDVYAdpr-elkDHLKRA 107 Starkeya novell...
EEE34962      33 IAVLGIPFGMPYypefmANEQSRAPDALRQSSldvdyvvshhdf-dlggplldnrdIKVVDCGNVSAdms-dhaEHYRRA 110 Rhodobacteracea...
Feature 1                            #                         # ###           ##                
1WOG_A       101 TEAARQVRGRcrVPVFLGGDHSVSYPLLRAFAdv----pdLHVVQLDAHLDFTDtrndtKWSNSSPFRRACEalpnlvhI 176 Deinococcus rad...
Q8XPR0       111 EAAVRRLANAgaLPIVLGGDHGITTPILRGLDqk----gpITLVHIDAHLDWRDsvngvKEGLSSPMRRASEmph-varI 185 Ralstonia solan...
Q165U0       112 ETGVRAALRAgaLPVVIGGDHSINIPCIRAYDgpeysggaFHILQIDAHLDFVDerhgvRHGHGNPMRRAAEqsy-vsgL 190 Roseobacter den...
YP_914955    110 EEAVRKILAAgaLPLIIGGDHGIPIPVLRAYDdq----gpITLIQIDAHLDWRDqingvHDGLSSPIRRASEmph-vqeI 184 Paracoccus deni...
Q98MW3        98 EAKTREVLALpaVPILLGGDDSVVIPFLAGFAdh----gpIWVLQIDAHIDWRDevlgeRHGYSSPMRRASEmph-vagI 172 Mesorhizobium loti
ADU69256     111 EQAVRKILAAgaIPIVLGGDHGITNPILRAFDdq----gpITIVHLDAHLDWRDevngvTDGLSSPMRRASElpf-vkdI 185 Pantoea sp. At-9b
ADB46624     112 REAVRIIQSQgtMPVVLGGDCAVDFPVLQGLEgi----gnFDIIHIDAHLDWTKpldgqKYFNGSPMRNAAAlpy-vgrI 186 Acidaminococcus...
YP_002153525 103 TSAVASLLERgaIPVVLGGDDSIPALCVRAFDay----gpLNVLQFDAHLDFRDevngeRHGYSSPIRRIREmpf-vrrI 177 Burkholderia ce...
ADH91517     108 EDVVRKIVASgaMPIVLGGDHSIPIPVIKALDdq----gpITLIQIDQHLDWREeingvTHGLSSPIRRASEmdh-vgeI 182 Starkeya novell...
EEE34962     111 EEVVRKIFRKntVLISLGGDHGIPIPITRALEefg---ekITLIQVDAHIDWREeingeTNGYSSPIRRASEldw-igdI 186 Rhodobacteracea...
Feature 1                                                              # #                       
1WOG_A       177 TTVGLRGlrfd-peaVAAARArGHTIIPMDdvt-adLAGVLAQlprgqNVYFSVDVDGFDPAVIPGTSSPEpDGLTYAQG 254 Deinococcus rad...
Q8XPR0       186 VQIGLRAqgsgrpedLAAARAyGADLITAYelhdigMDAVLARipdggNYYITIDADGLDPSTMPAVAGPApGGLTFAQT 265 Ralstonia solan...
Q165U0       191 TQVGIRNvsstaregYADARAmGSQIISVRqarrmgLEKLLDSvpagvPVYITIDIDAFCPSIAPGTGTPShGGFLYYEV 270 Roseobacter den...
YP_914955    185 FQIGIRAqgtarpeeYEAAQAyGSNIVTAYelhekgMQAILERipdggRYYITVDADGVDPSVMPGVAGPAfGGVTYCQM 264 Paracoccus deni...
Q98MW3       173 VQVGLRSvgsarlaeIEAARHyGSRFVTARevhaqgVDAALRHipegaRVVATFDCDSLDPGIMPGVAARTpGGLTYTQA 252 Mesorhizobium loti
ADU69256     186 IQIGMRAsgsarqeeADYAREwGAKIITAYelhdhgMDAVLAQipdggRYYLTIDADGFDPAVMPAVAGPApGGVTFVQA 265 Pantoea sp. At-9b
ADB46624     187 LHLGIRGigssgpedFAEAREhGDGIYSVRdvrkkgIEAILEEfkpaeKAVLCFDIDAMDAVYAPATGSPMfGGFNYDDA 266 Acidaminococcus...
YP_002153525 178 VQVGLRGsgsarpsdVEDALRsGNVLVPADvvhdegIEAVTRHlvddaPWFVTVDIDGLDPSIAPGVVAPMpGGLTFHQT 257 Burkholderia ce...
ADH91517     183 FQIGLHAsgsgrqeeYDAAKAyGAHLVSAYdvhergIQHVLDMipdggRYYLTVDLDAFEPGIAPGVAAPCaGGMTFMQT 262 Starkeya novell...
EEE34962     187 VQIGIRGigsartpeVEYAKSyGADIITAYemhdigMDAVLDRipdggPYYLTIDADGMDPTIMPGVISQTpGGLNWLQI 266 Rhodobacteracea...
Feature 1                           #                         
1WOG_A       255 MKILAAAAanntvVGLDLVELAPNLDpt-gRSELLMARLVMETLC 298 Deinococcus radiodurans
Q8XPR0       266 RKLIHGLVrkgrvVGMDIVEIQPKKDin-qISCITAGRLILNLIG 309 Ralstonia solanacearum
Q165U0       271 LELLQGVAgrnsvIGLDLVEVAPDYDpt-gSTSILAAQLLLNTIG 314 Roseobacter denitrificans OCh 114
YP_914955    265 RELLHGLVrkgrvVGMDIVEITPSKDvn-qLTAIAAGRFFVNLVG 308 Paracoccus denitrificans PD1222
Q98MW3       253 IDLIAGLGkrariAGFDLVELYPPADid-gLSALTAARLLVNVIG 296 Mesorhizobium loti
ADU69256     266 RKLIHGLVkkgrvVGMDIVEIQPAKDvh-qISCMTAGRLVLNLIG 309 Pantoea sp. At-9b
ADB46624     267 VDILEAIArhtelAGMVLTEVAPPFDdvggTTGYLAARLISDMLG 311 Acidaminococcus fermentans DSM 20731
YP_002153525 258 RGVLRHLCantrlAGIDVVEYHPALDvr-eMTALTIVRLLTNVIG 301 Burkholderia cenocepacia J2315
ADH91517     263 RSLIHGLVkkgrvLGMDVVEITPATDvn-qITCITAGRLIVNLVG 306 Starkeya novella DSM 506
EEE34962     267 RKLIHGLVkkgrvVGMDLVEIAPANDvq-mTTMVHAERLICNFIG 310 Rhodobacteraceae bacterium KLH11

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap