3C0K,2AS0,2CWW


Conserved Protein Domain Family
RlmI_M_like
?
cd11572: RlmI_M_like 
Click on image for an interactive view with Cn3D
Middle domain of the SAM-dependent methyltransferase RlmI and related proteins
This middle or central domain is typically found between an N-terminal PUA domain and a C-terminal SAM-dependent methyltransferase domain, such as in the Escherichia coli ribosomal RNA large subunit methyltransferase RlmI (YccW). It may be involved in binding to the RNA substrate.
Links
?
Statistics
?
PSSM-Id: 211413
Aligned: 237 rows
Threshold Bit Score: 57.0872
Created: 31-Jan-2012
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
 
putative RNA
Conserved site includes 2 residues -Click on image for an interactive view with Cn3D
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:conserved residues may participate in the binding of the RNA substrate
Scroll to Sequence Alignment Display
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
Feature 1                                  #                       #                             
3C0K_A        77 AFFSRRLQQAQKWRDWLAqkdgldSYRLIAGESDGLPGITIDRFgnfLVLQLLsaGAEYQRAALISALQTLYPecSIYDR 156 Escherichia col...
NP_229497     74 NFIKNRIESALKRKKKLVke--ttAFRVVHSEGDFLPGLIVDLFgdyLVFQITtlGMEKMKDWILDSLVEIFKpkGIYEK 151 Thermotoga mari...
NP_214419     76 ELIRKRIKQAYEYRKRLYin--snAYRLVHSEGDLLPGLIVDVYgsyLAVEFTtyGMNQFREVILDTLVELLRpkGIYEK 153 Aquifex aeolicu...
YP_003431729  76 ELIKERVEQAYNYRKSLSln--tdAFRLIHSEGDFLPGLVMDVYgdyAVVEFTtfGMNAMREWVISAILEVLKpkGIYEK 153 Hydrogenobacter...
YP_004282093  76 KFFIKRISEALEYRKGIVpsd-stGFRLIHSEADYLPGLIVDYYngyLVVQITtlGMEVLKDKVVQALIEVVKpkGIYEK 154 Desulfurobacter...
YP_002729004  75 NFFVEKVNKALEKRKQLQni--tnAYRVIHSEADGLSGLIVDYYdgyLSLQINtaGMERLRDLIVSTLIEVLNpkGIYEK 152 Sulfurihydrogen...
YP_002729885  77 DFIKERILKAYRKRYRLLek--tdAVRVVHSEADGLPGLIVDLYdryLSVQINtaGMERFRENIIKALIDIFEpeGIVEK 154 Persephonella m...
NP_906291     75 EELKKRLQKAILKRESLLlk--tnGARLIHSESDELPGLIVDSYanhLSLQINtaGMERFRPLILESLKELLSplSIIDK 152 Wolinella succi...
YP_003305251  75 KFFHNRIKNAIKKRESLLnv--snAVRLIHSEADFLPGLIVDKYgenLAIQINtaGMENFRELIIGTLKQFLNpqWMVEK 152 Sulfurospirillu...
NP_603930     75 KFIFERIKNAYEKREHLLde--tnSVRAFYSEADFIPGLIIDKFdkyVSIQFRnsGVEIFRQDIIEAVKKCLKpkGIYER 152 Fusobacterium n...

Feature 1                            
3C0K_A       157 SDVavrkkeGXELTQGPVTG 176 Escherichia coli K12
NP_229497    152 SEGtfrekeGLDNREEWVYG 171 Thermotoga maritima MSB8
NP_214419    154 VNEiakrveGLDVEERVIYG 173 Aquifex aeolicus VF5
YP_003431729 154 RNEyaqkaeGFKTEEGVIYG 173 Hydrogenobacter thermophilus TK-6
YP_004282093 155 STVqvreleGLPLVEQSLYG 174 Desulfurobacterium thermolithotrophum DSM 11699
YP_002729004 153 SDEksrekeGLETVEKLIYG 172 Sulfurihydrogenibium azorense Az-Fu1
YP_002729885 155 SDEksrekeGLKTENKVVYG 174 Persephonella marina EX-H1
NP_906291    153 SDEksrqleGLESSNGVIFG 172 Wolinella succinogenes DSM 1740
YP_003305251 153 SDLysreieGLEDKNGTLFG 172 Sulfurospirillum deleyianum DSM 6946
NP_603930    153 SDVenrvieGVETKTGIIFG 172 Fusobacterium nucleatum subsp. nucleatum ATCC 25586

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap