Conserved Protein Domain Family
SLC6sbd_u2

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cd11554: SLC6sbd_u2 
uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain
SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, and are the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter.
Statistics
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PSSM-Id: 212092
Aligned: 10 rows
Threshold Bit Score: 476.04
Created: 4-Jan-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:Na binding site 2 [ion binding site]
Evidence:
  • Comment:based on Aquifex aeolicus LeuT (SLC6) with structure
  • Comment:One of two Na+ binding sites in Aquifex aeolicus LeuT. It binds the Na+ ion designated Na2, and appears conserved in Vibrio parahaemolyticus vSGLT and other SLC5 proteins

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                       #  #                                                              
XP_001212819   22 DVWGSRTAFVLAAMGGAVGLGNILRYPSVVFPNNGlQWFLPYFIALIFLAMPILMLEICIGQAARGGgvvaf-hrinKRA 100  Aspergillus t...
XP_001796229   23 DQWPSRTAFILASLSGVIGMGNFLRYPSTVFNNHGlQWFIPYLLALVLLAVPALALELAAGNAYRGGtvtaf-nkisRRM 101  Phaeosphaeria...
XP_001938459   23 DMFSNRIQFVLCAMGGAVGLGNLLRFPSVVYNNYGlQFFIPYFIALFFVALPILVLEISLGTVYRGGpvlaw-hsvnKRA 101  Pyrenophora t...
CAP94529       26 DQWPSRAAFLLAAMGGCAGQGNLLRYPSVVYNNYGlQWFIPYLLAVFAVAIPALILEISIGQAYRGGtviaf-nninHRL 104  Penicillium c...
EHA50374       30 DNWPSRTAFVLACMGGTVGLGNLLRFPSIAFQNNGlQWFIPYFMAVFLLAIPVVILEVAIGQAYRGGclvay-dhisRRT 108  Magnaporthe g...
EFQ95509       23 AEWPSRTPYVLASMGGAMGFGNLLRFPSQVFNNNGiQWFIPYLMAVCLLAIPVLILEVAIGQAYRSGcvigy-ngldRRF 101  Pyrenophora t...
CBZ50958      230 MEWKSRFAFVLATIGAAVGIGCVWRFPTYCYKFGGgAFLVPYVLMLVLLGMPLLTLEMALGQVFRGGhmklf-nlisPRL 308  Neospora cani...
EFQ34457       24 DMWGSRTSFIFAAMGGAVGLGNLLRFPSIVFNNHGlQFFIPYLISLACLAIPTLLLEISVGQAYRSGcvlaw-hhvhKRA 102  Glomerella gr...
EFC39999      130 QQWGSRLSFILATIGAAIGFGSFVRFPYLAYKQGGgAFLIPYTVCLIVLGIPLLILELSMGQLLRKSsikalgllnnRMR 209  Naegleria gru...
ACO68689       53 PRWGSTAEFILAAIGSAVGLGNLLRFPFMVYKHGGcAFLVPYALAVVFLGVPILAMELALGQVAQSGcvdal-aamhARA 131  Micromonas sp...
Feature 1                                                                                         
XP_001212819  101 KGVGLGTIATGYMVATYYVPILSWTMKYFRHSFtdplpwtgrgeefylgtvianqdpi---------------------- 158  Aspergillus t...
XP_001796229  102 RGTGFALNYVGLVVSIYFIPIIAWGMVFFQKSFtsplpwagntesyfmyevtsa-------------------------- 155  Phaeosphaeria...
XP_001938459  102 KGIGLSVVFNGYVVVTYYVPLLAWIMKYFSRSFqsplpwkgqdlseyfaqvivanvdpa--------------------- 160  Pyrenophora t...
CAP94529      105 KGVGMGPILVSFVVVQYFTVNLAWIMNYFRNSFrspipwegrieefymgnvvanidpv---------------------- 162  Penicillium c...
EHA50374      109 KGLGLALVMNGYIVCNYFVPILAWVMIYFRHSFsnplpwaedsqdffdnqvvqavsg----------------------- 165  Magnaporthe g...
EFQ95509      102 TGVGLGMVCVGYAVAIYYIPILSWVMVYFRNSFrsadsfpwtenpqayfshvvnevppt--------------------- 160  Pyrenophora t...
CBZ50958      309 RGLAAATILQAFFICAYYSVFLSWGLHYFLSCWqaplpwvvspqqvdlcaqfhgdqsacenavrpatldvpaspqwaegt 388  Neospora cani...
EFQ34457      103 KGVGFGVVYIGYAIVIYYVPILAWIMTYFRHSFispmpwsgrneeffygtvlqdvpgv---------------------- 160  Glomerella gr...
EFC39999      210 GLGVAAVLFGGFGICTYYSVLISWIFVYFYHMFawelpwkgkteeyfydv------------------------------ 259  Naegleria gru...
ACO68689      132 WGIGAAATAGAFLLASYYCAVLAWAWCFLAATWqptmpwsdgraaaffvddvlarwdadgtav----------------- 194  Micromonas sp...
Feature 1                                                                                         
XP_001212819  159 ---------------------------------------pgnystngntvvdyaqypgtgiigeTAGWAAFVWFVVFLCI 199  Aspergillus t...
XP_001796229  156 --------------------------------------------idpdssgtwvdypgtsfdgrLVGWNAFLFFLVWLCI 191  Phaeosphaeria...
XP_001938459  161 ---------------------------------------stgsfnpdgsvaeytkwvgtgmlgeTAGWAIFTWFVTWLCV 201  Pyrenophora t...
CAP94529      163 ---------------------------------------vgnltagngavahytvypgvaligeTVGWSAFIWFLIWISI 203  Penicillium c...
EHA50374      166 ----------------------------------------ipgeivdgsvtsytsypemgmvgeIVGWSAFTWFVVWLCM 205  Magnaporthe g...
EFQ95509      161 ---------------------------------------pavysdhgskvlqyasypgtdvsgeLIGWCLFSWFIVWICL 201  Pyrenophora t...
CBZ50958      389 qrlhggvsetgpnvcawipaqltapgggvgegrcsadirakaqdflftevlglsakhpgsltftVLLGLAFVWVQVFFSL 468  Neospora cani...
EFQ34457      161 ---------------------------------------egnltadgnavqdytyypgmgmvteTTLWNLFTWFVVWLCM 201  Glomerella gr...
EFC39999      260 -----------------------------------------------ilrrssgdtvvselniaITVSLFLVWVSVYCGV 292  Naegleria gru...
ACO68689      195 -----------------------------------sshgrsddvdesgaiaafarkglgpmnwwLVLGLTLTWALCFSCV 239  Micromonas sp...
Feature 1                                                                                         
XP_001212819  200 FRGVGLTGRVVYITMGLPIVIIIILLGRSVSLNNAVDGIRMYMGHWdssklasgaIWQAAAGQIFFSTGVGFGYFTAFAS 279  Aspergillus t...
XP_001796229  192 FRGTGWTGRVVYFTMGMPLIVIVILIGRGASLPNAGRGIRLYFATWrsealsgtgIWQDAVGQVFYSTGVGFGFYTAYAS 271  Phaeosphaeria...
XP_001938459  202 FRGVGMTGRVIYVTMGLPLVLIIILIGRSCSLPNAGDGIKLYFATWrtsalqspqIWQAAFGQIFFSIGVGFGYFTSWAS 281  Pyrenophora t...
CAP94529      204 FRGVGLTGRVVYWTMGLPIVTTLIIVGRSCSLENASEGVRLLWATWrgdqlasgtVWQTAVGQVFFSTGIGFGYFTSYAS 283  Penicillium c...
EHA50374      206 FSGVGMTGRVVYFTMGMPIVMIIILLGRGASMENAVEGIKLYVAEWhgdklgrpaIWQAAASHIFFSIGAGMGYYTSYAS 285  Magnaporthe g...
EFQ95509      202 YKGIAITARVVYITIVLPIILTIVLVGRGASLPNAGRGIKLYFGEFnadqlaagkIWQAATSQVFYSTGVGFGYYTAYAS 281  Pyrenophora t...
CBZ50958      469 FKGLQSLTAVIYAAVLLPIFAILLVMISALTLDGADLGLSYLFSFNwrtlvdqpeIWGEAASQVFFSLGVFQGVMTAYAS 548  Neospora cani...
EFQ34457      202 FKGIGLTGRVVYFTMAAPLVLMIVLIGRGCSLPNAIDGIRIYWTEWhgeklssgtIWQEACGQVFFSTGIGMGYYTSYAS 281  Glomerella gr...
EFC39999      293 WKGTSSTGIITYITVPLPILLLLILLITSFFLEGSWTGMYYFIKPDftki-lnveIWLTAAGQVFFSLSLASGTMIALSS 371  Naegleria gru...
ACO68689      240 KRGAESAGKAVWITVPLPYLALFVLFFKGVFAPGAGAGITAYLGTIelatlgrgeAWIDAVAQIFFGLSVCCGAMPAYAS 319  Micromonas sp...
Feature 1                                                                                         
XP_001212819  280 YNtkfsnaVQDAVIIAVSNSLFEIIAAFAVFGVIGFLglqped------------vqlstFTVGFLTYPSAIVe--MPGA 345  Aspergillus t...
XP_001796229  272 YNhqfanaAQDAVILVFTNAFLEASLAFAAFGIVGFMgmtpdp-----------enpmgsYSLGFMTYPEAFVh--MPGS 338  Phaeosphaeria...
XP_001938459  282 YCtqhsnaVQDALIIGFSNSAVEIIAAFSVFGVIGYLgidpse-----------gralgtFVTGFITYPEALAq--MPGA 348  Pyrenophora t...
CAP94529      284 YNskhsnaVMDAILICGSNILFENVAAFAVFGVVGYLrrwpqd-----------gerlgaFVVGFLTLPEAVLh--MPGA 350  Penicillium c...
EHA50374      286 YNqkfsnaVQDALIIACSNSAIEVSAGFAVFGIVGYLgirpds-----------gevlgtYNLAFITLPAAFVq--MPGS 352  Magnaporthe g...
EFQ95509      282 YNskfadaVQDAMMICSANALFESFAAFAVFGVVGYLgmtpenq----------qeavgtYTLGFYTLPSAIQq--MPGA 349  Pyrenophora t...
CBZ50958      549 HKkvtqntIVDATAVAGSNTVLSFVSGVATFAIAGHVakrvgaidrvtgaadlsamniagSQLVFVLYPISLAt--LPAP 626  Neospora cani...
EFQ34457      282 YNskysnaVQDSLIICISNSLIEIIGSMSVFGVVGYLgmhpdn-----------serlntFVVGFLTYPEAISe--MPGS 348  Glomerella gr...
EFC39999      372 YNdpkqniVKDAWIIGLSTYIFSIFAGFCMFAILGYMahskgvei--------dhivqggLALAFVVIPEAITl--MPAS 441  Naegleria gru...
ACO68689      320 NCsrnercGANAIRVAVANSLTSLLSGFVVFAFLGHLamtrgvdv--------advaeggWSLAFVVYPSAFAsfgVPGG 391  Micromonas sp...
Feature 1                      #  ##                                                              
XP_001212819  346 NFWAVLFFITLMLVGISSAFALVESLVTLLadsav--grkvPRTAICTVVVVVSFLLSLiYCTEFGLYILDAVDTWLNNL 423  Aspergillus t...
XP_001796229  339 NFWSALFFLTLAVVGVSSTFVMLDAFMTLImdsafartrrwTRTWVATVLVFVVFLLSLpNCTQFGYYYLDGIDRWINNV 418  Phaeosphaeria...
XP_001938459  349 PFFAVIFFFTLFLLGLTSAFSLLEVMTTLImdtdw--grkiPRWAVCTIVTIVSALISLiYCTEFGLQALDAVDTYVNDV 426  Pyrenophora t...
CAP94529      351 NWWAILLFFTLVVLGFSSAFVMLDAVATLAvdsg----vkmSRPMIVTSLTILSFLMCLpYCTQFGFYLLDGIDRWINNV 426  Penicillium c...
EHA50374      353 NFWAVIFFITIMVLGFSSCFAMLESLVTLVmdtgi--skrvSRVAVSTVIIIVSFLLSLmYCTHFGRDLLNAVDAWISDL 430  Magnaporthe g...
EFQ95509      350 PFWAVLFFLTLFLLGVSSSFALLDAMITTIcdthw--grkfKHSTIATIITVISALLSLfYSTGFGYQATNAVDAAISNI 427  Pyrenophora t...
CBZ50958      627 QLFCALFFLAFFLLGITSAISFVQPVIDLLkasrl--lkrtKRWKLTLAACVVGFLLGLpFCLRSGIYLIESADYHWSVI 704  Neospora cani...
EFQ34457      349 NFWGVLFFATLFILGLGSAFALLETLVTMVcdsdw--gkkySRPWVSTIIVLASFLISLpFCTEFGYTLVDAADTWINYL 426  Glomerella gr...
EFC39999      442 HVFCILFLVAMYTLAIDSCFGMIEGVNAVIhdaf----pnlKLHWISLVTCFLGFIFGIpYCLDNGYYLMDIVDHYLSDF 517  Naegleria gru...
ACO68689      392 HIFATLFWVAVLTLGVDSAFALTEAVVCAVcdrsv--ycaaNRGFAAFCVCFLCWCLGLtMCTRGGYYVVDIVDAYVSRY 469  Micromonas sp...
Feature 1                                                              
XP_001212819  424 SLLFIAWSECVASTTMYRCTDVlgqv-gtpsFIVYNAGYFGGTIFGIAVGHAV 475  Aspergillus terreus NIH2624
XP_001796229  419 GLVFVVWAECVSATTVYRFEDVvdqv-glqaYITYNAGFFGAQLLSLIIGHTV 470  Phaeosphaeria nodorum SN15
XP_001938459  427 ALFFTVWCECFAATSFYRCRDVahqv-gwpgFLTYTIGFAVAQGLGIRVAYGS 478  Pyrenophora tritici-repentis Pt-1C-BFP
CAP94529      427 ALIFVVWSELVGATTVYRWHDVvsqt-glpaFAVYNFGYFGGQIAGVAVAHGT 478  Penicillium chrysogenum Wisconsin 54-1255
EHA50374      431 SLVGIVALESVVSTTVYRFRDVtgqv-glpaFAIFNGGYALAFVLGLIIAHHV 482  Magnaporthe grisea 70-15
EFQ95509      428 SLIFVVWAECVCATSFYRFIDVigqv-gapsFWLYQCSYIGAQIIGNAVAHTV 479  Pyrenophora teres f. teres 0-1
CBZ50958      705 GLTFLGCCESLAFGWVYGLGRQvqav-gllpVAIHAVSYLGGATLAAVILFVV 756  Neospora caninum Liverpool
EFQ34457      427 ALFWIVWCEAVCATTLYRYRDVvdqcgllswCLYNVFGYIGGMFIGLVVAHSV 479  Glomerella graminicola M1.001
EFC39999      518 CLVLSAIGQCIVVGYLISDESViarv-rkqwREYSSSSYANVEEGNATPIDSS 569  Naegleria gruberi strain NEG-M
ACO68689      470 TLTIAGLAECVFVGWVYGAERLrdetravsgHAFMGVGSYFPVTIKYVVPVAL 522  Micromonas sp. RCC299

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