2YEU,3NL9,2YFD


Conserved Protein Domain Family
NTP-PPase_DR2231_like

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cd11530: NTP-PPase_DR2231_like 
Click on image for an interactive view with Cn3D
Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in Deinococcus radiodurans DR2231 protein and its bacterial homologs
This family includes a MazG-like NTP-PPase from Deinococcus radiodurans (DR2231), a putative NTP-PPase YP_001813558.1 from Exiguobacterium sibiricum and their bacterial homologs. DR2231 shows significant structural resemblance to MazG proteins, but is functionally related to the dimeric dUTPases. It can hydrolyze dUTP into dUMP. DR2231-like proteins contain a well conserved divalent ion binding motif, EXXEX(12-28)EXXD, which is the identity signature for the all-alpha-helical NTP-PPase superfamily. Unlike normal dimeric dUTPase-like proteins with a central four-helix bundle forming the active site, YP_001813558.1 displays a very unusual interlaced segment-swapped dimer. It potentially prefers to hydrolyze dCTPs or its derivatives. YP_001813558.1-like proteins contain a variant divalent ion binding motif, EXXEX(12-28)AXXD.
Statistics
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PSSM-Id: 212137
Aligned: 35 rows
Threshold Bit Score: 53.4326
Created: 12-Sep-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
metal binding
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: metal binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:E E E DClick to see conserved feature residue pattern help
Evidence:
  • Structure:2YFD; Deinococcus radiodurans DR2231 protein binds Mg2+, contacts at 4.0A
  • Comment:Most of members the NTP-PPase superfamily contain the well-conserved divalent ion-binding motif, EEED.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                              #  #                            #  #      
2YEU_A        17 AERLHEFHRAIGaatperpt--ppppellrLRQTLLDEESAEVRAEIdhllarqaagealsagdlapLAHELADLLYVTY 94  Deinococcus rad...
2YFD_A        17 AERLHEFHRAIGaatperpt--ppppellrLRQTLLDEESAEVRAEIdhllarqaagealsagdlapLAHELADLLYVTY 94  Deinococcus rad...
YP_004915333   5 LAAIRAYHDALSipqaehgapvdisdmdiiLRQALLMDGGSETFKAIksge-------------maaILAGLTDLAYYSL 71  Methylomicrobiu...
ZP_08485291    5 LQSVREFREHFGfsreegr----lsdmtivLRQAWLMEGGKQVFLAIkqgd-------------mtvILARLTGLAYLAL 67  Methylomicrobiu...
ZP_03699488    5 FALRREFMQRFDltppaqpt---pqptdltLWETMLREELAEFWQALaeykalagvdeaervrrmaeLAAEGVDVMNVMT 81  Chromobacterium...
ZP_02537317   12 MAAVQAFHDKHDfkntg--------geelkYRVALMAEELGEISSCVtkgk------------rvelLAEEVADLLILVM 71  Endoriftia pers...
ZP_08779691    5 LKLVREFHDTFSlpqaehganerlsdmdivMRQALLMDEGSAVLKAIkagd-------------mveILAGLVNLAYCAL 71  Methylobacter t...
YP_002794868   7 VADRRAFMAAAGevqpvhpv---frphklaMWETMIAEETAELAEALahyrtvnpadpqaltaaqaeLCAEGCDLINVIV 83  Laribacter hong...
ZP_05112672    6 INALRNFMTTFEasq------------dpaLWDKLIAEELAEVREAVv------------------nLAKELADVEYVMT 55  Labrenzia alexa...
YP_003796200   5 QAMVEEFHRKFDiavsdrps--lpedatrqLRVRLIQEEFEELQEAMvard-------------lpgVAKELADLLYVVY 69  Candidatus Nitr...
Feature 1                                                                                      
2YEU_A        95 GALDQLg------------------------------------------------------iDADAVFAEVHRANLSK 118 Deinococcus radio...
2YFD_A        95 GALDQLg------------------------------------------------------iDADAVFAEVHRANLSK 118 Deinococcus radio...
YP_004915333  72 SAIALSgnevsdepvdwqhdgfvlsvmtllseeidrckdgdpknysalyclcvhltkaflnaDFNGAFQCVHANNMAR 149 Methylomicrobium ...
ZP_08485291   68 NAVAMQgaevnmqpvswqhdgsvlslmrligdrinacssglsedysalycacaqlsggflnaDFDKSFGLFHRHQMET 145 Methylomicrobium ...
ZP_03699488   82 GLLLSQg------------------------------------------------------lPVAEMAREIHAANLRK 105 Chromobacterium s...
ZP_02537317   72 GTGIAAd------------------------------------------------------fDLNAAFWNKMEKLMKR 95  Endoriftia persep...
ZP_08779691   72 GAIAIRgndvtdhpvtwrhdgfilsiirilsdrinnctsgntddysavyclcahlsssfinaDFNKAFQAIHDGKMSK 149 Methylobacter tun...
YP_002794868  84 GLLLSQg------------------------------------------------------lPVSAMADAIHRANLDK 107 Laribacter hongko...
ZP_05112672   56 GYILASgedsvpvkrmvqlea---------------------------iafvlenlcghnteMRQQVFQFVDESNLSK 106 Labrenzia alexand...
YP_003796200  70 GTAVSYg------------------------------------------------------lDMDPVFREVHRSNLSK 93  Candidatus Nitros...

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