3CRC,2YXH


Conserved Protein Domain Family
NTP-PPase_MazG_Nterm

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cd11528: NTP-PPase_MazG_Nterm 
Click on image for an interactive view with Cn3D
Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) N-terminal tandem-domain of MazG proteins from Escherichia coli and bacterial homologs
MazG is a NTP-PPase that hydrolyzes all canonical NTPs into their corresponding nucleoside monophosphates and pyrophosphate. The prototype of this family is MazG proteins from Escherichia coli (EcMazG) that represents the most abundant form consisting two sequence-related domains in tandem, this family corresponding to the N-terminal MazG-like domain. EcMazG functions as a regulator of cellular response to starvation by lowering the cellular concentration of guanosine 3',5'-bispyrophosphate (ppGpp). EcMazG exists as a dimer; each monomer contains two tandem MazG-like domains with similarly folded globular structures. However, only the C-terminal domain has well-ordered active site and exhibits an NTPase activity responsible for the regulation of bacterial cell survival under nutritional stress. Divalent ions, such as Mg2+ or Mn2+, are required for activity; however, this domain does not exhibit an NTPase activity despite containing structural features such as the EEXX(E/D) motif and key basic catalytic residues responsible for nucleotide pyrophosphohydrolysis activity. It is suggested that the N-terminal domain of EcMazG might have a house-cleaning function by hydrolyzing noncanonical NTPs whose incorporation into the nascent DNA leads to increased mutagenesis and DNA damage.
Statistics
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PSSM-Id: 212135
Aligned: 144 rows
Threshold Bit Score: 97.1987
Created: 29-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
metal bindinghomodimer
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: metal binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:E E E DClick to see conserved feature residue pattern help
Evidence:
  • Comment:Most members of the NTP-PPase superfamily contain the well-conserved divalent ion-binding motif, EEED.
  • Structure:2YXH; Thermotoga maritima MazG-related protein binds two Mg2+ ions; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                          #  #                #  #                      
3CRC_B         7 DRLLTIMQRLRdpengCPWDKEQTFATIAPYTLEETYEVLDAIAREDFd-dLRGELGDLLFQVVFYAQMAqeegRFDFND 85  Escherichia col...
2YXH_A         3 ERLLEIIERSLr---kCPWLEKQSIETLLEALASEIEEVAEAVKKNDLa-nLEEEIGDXIYDALLVAAVAqrdyGIDLES 78  Thermotoga mari...
AEJ61391      35 SLLYDIIKFLRsp-egCPWDRTQTLISVLPNLLEEVYELWTALFAERTe-eVEEEIGDVYLNALMFMIIAedlgYFSSEE 112 Spirochaeta the...
YP_004411226  17 EQLHRIIGLLRsp-egCPWDRELTAPRTAQSIIDETYEYIDELKNHRIs-gQREEIGDILINVVTLLHMHednaSFPATD 94  Spirochaeta coc...
YP_004247387  17 MQLFAIVSLLRse-qgCPWDREQSPKQVSTHLIDETYEYLDAILSDDDe-gQQEELGDVLLNAMMLLEMHqetdASASIE 94  Spirochaeta sp....
YP_003803785  35 SRLAAIIKLLRgp-ggCPWDKKQTISSMAPQLLEETYEVIDGVKEEDLa-nTREELGDVYLVTTMMAQILsedgLSSHTE 112 Spirochaeta sma...
YP_004377390   7 SSLIQVVRSMVle-grCPWMRRQSLLSITESLAEECQEFSEAVVEAKPkkeVISEAGDVLTLTLALCFLLeregMCSVGE 85  Chlamydophila p...
NP_829261      7 SQLIELVRKMVsd-gvCPWTDHQNFDSIIGHILQECQELSEAVHEGHPmeeVTSEAGDVLTLVLLLCFKMeflgMSSVDA 85  Chlamydophila c...
Q9Z8E2         6 FSKLIGTVRAMvvegrCPWSLQQSLVSMVEHILGECQEFHEAVLQGKTvqeVGSEAGDVLTLVLILCFLLeregVLASED 85  Chlamydophila p...
Q9PKD9         6 ILQLAAVSRAMalqgvCPWTNLQSIDSMLRYILGECQELADAVKENKAsleIASEAGDVLTLVLTLCFLLeregKLKAEE 85  Chlamydia murid...
Feature 1                                             
3CRC_B        86 ICAAISDKLERRHPHVFadssaen-ssevlarWEQIK 121 Escherichia coli K-12
2YXH_A        79 AIQKVVEKISHRKPWLFweekisl--eeaekiWKERK 113 Thermotoga maritima
AEJ61391     113 VLYRVIQKLYSRHSHVFgeakaan-aeealenWNSEK 148 Spirochaeta thermophila DSM 6578
YP_004411226  95 AINEVCEKLIRRHPHVFtdtvsahdstevlsvWNNVK 131 Spirochaeta coccoides DSM 17374
YP_004247387  95 ALNQVCEKLIRRHPHVFsdqkvsn-skevidvWNAIK 130 Spirochaeta sp. Buddy
YP_003803785 113 ILNEVCNKLIRRHPHVFsgataen-peevlklWNDVK 148 Spirochaeta smaragdinae DSM 11293
YP_004377390  86 IINEAIAKLRRRAPYIFqegahpvsieeaaylWELAK 122 Chlamydophila pecorum E58
NP_829261     86 IITEALAKIRRRAPHVFdssktis-yeearkaWALAK 121 Chlamydophila caviae GPIC
Q9Z8E2        86 VANEAMEKLRRRAPYIFaedykpvsieeadrlWELAK 122 Chlamydophila pneumoniae
Q9PKD9        86 VFAEAIAKLRRRSPHVFdpdnqis-leeaaeyWSRMK 121 Chlamydia muridarum

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