4ZPR,4ZP4


Conserved Protein Domain Family
bHLH-PAS_HIF

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cd11433: bHLH-PAS_HIF 
Click on image for an interactive view with Cn3D
basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in hypoxia-inducible factor (HIF) family
The HIF family contains bHLH-PAS transcription regulators involved in oxygen homeostasis, including HIF1a, HIF2a, and HIF3a. They have been implicated in development, postnatal physiology as well as disease pathogenesis. HIF1a, also termed HIF-1-alpha, or HIF1-alpha, or ARNT-interacting protein, or Basic-helix-loop-helix-PAS protein MOP1, or Class E basic helix-loop-helix protein 78 (bHLHe78), or Member of PAS protein 1, or PAS domain-containing protein 8 (PASD8), functions as a master transcriptional regulator of the adaptive response to hypoxia. HIF2a, also termed HIF-2-alpha, or HIF2-alpha, or endothelial PAS domain-containing protein 1 (EPAS-1), or Basic-helix-loop-helix-PAS protein MOP2, or Class E basic helix-loop-helix protein 73 (bHLHe73), or Member of PAS protein 2, or PAS domain-containing protein 2 (PASD2), or HIF-1-alpha-like factor (HLF), is a bHLH-PAS transcription factor involved in the induction of oxygen regulated genes. HIF3a, also termed HIF-3-alpha, or HIF3-alpha, or endothelial PAS domain-containing protein 1 (EPAS-1), or Basic-helix-loop-helix-PAS protein MOP7, or Class E basic helix-loop-helix protein 17 (bHLHe17), or Member of PAS protein 7, or PAS domain-containing protein 7 (PASD7), or HIF3-alpha-1, or inhibitory PAS domain protein (IPAS), is a bHLH-PAS transcriptional regulator in adaptive response to low oxygen tension. It plays a role in the regulation of hypoxia-inducible gene expression.
Statistics
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PSSM-Id: 381439
Aligned: 23 rows
Threshold Bit Score: 99.6258
Created: 28-Oct-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA bindingdimer interface
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:The N-terminal basic region of bHLH mediates high-affinity DNA-binding to specific hexanucleotide sequences
  • Structure:4ZPR; Mus musculus heterodimeric HIF-1a:ARNT complex with HRE DNA, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ## ###  ## ##                        ##                   
4ZPR_B          6 RKEKSRDAARSRRSKESEVFYELAHQLPLphnvssHLDKASVMRLTISYLRVRKLLDA 63   house mouse
Q24167         73 RKEKSRDAARCRRSKETEIFMELSAALPLktddvnQLDKASVMRITIAFLKIREMLQF 130  fruit fly
AJY58097       13 RKEKSRDAARNRRSQEAEIFSQRCNALPVpsnvqaQLDKSSVMRIAISHLKLAKIIEK 70   Mediterranean mussel
NP_001071731   28 RREKSRDAARCRRNKECDIFQEICDNLPVahdvigQLDRSALLRLVISYIKLRQALPK 85   vase tunicate
EEC18554       14 RKEKSRDAARCRRSKESEIFSELSQQLPLaegvtsQLDKASVMRLAISYLRMHEILEP 71   black-legged tick
XP_013386593    9 RKEKSRNAARERRGKEAEVFSDLTNEIPLpqnataQLDKASIMRISIAYLKLRSLMEQ 66   Lingula anatina
ODN05678       26 RRERSKVAARCRRGKESEIFSELSVSLPVtettraSLDKASVMRLTLCDLKLKQMMDA 83   Orchesella cincta
XP_022644150   34 RKEKSRDAARCRRGKESEIFNEMLSYLPLtdevasQLDKMSILRLTLISLRLNRFLGA 91   honeybee mite
AII22157       10 QKKKSRDAARQRRGQQNDEFSELASQLPIipkttsNLDRLCVMRLSNSFVKMKHIIRQ 67   Aurelia sp. 1 GW-2014
XP_014772617   14 RREKSRDAARQRRNQETHIFTELADTLPLakgktrQLDKASIMRLTLCLMKQHEIRLS 71   Octopus bimaculoides

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