Conserved Protein Domain Family
bHLH_TS_musculin_like

?
cd11423: bHLH_TS_musculin_like 
basic helix-loop-helix (bHLH) domain found in musculin, transcription factor 21 (TCF-21) and similar proteins
The family includes two bHLH transcription factors, musculin and transcription factor 21 (TCF-21). Musculin, also termed activated B-cell factor 1 (ABF-1), or Class A basic helix-loop-helix protein 22 (bHLHa22), is a bHLH transcription factor expressed in activated B lymphocytes. It acts as a transcription repressor capable of inhibiting the transactivation capability of TCF3/E47. Musculin may play a role in regulating antigen-dependent B-cell differentiation. The mouse homolog, musculin, is suggested to be a repressor of myogenesis that is expressed in developing muscle and in the spleen. TCF-21, also termed capsulin, or Class A basic helix-loop-helix protein 23 (bHLHa23), or epicardin, or podocyte-expressed 1 (Pod-1), is a bHLH transcription factor expressed specifically in mesodermally-derived cells that surround the epithelium of the developing gastrointestinal, genitourinary and respiratory systems during mouse embryogenesis. It may play a role in the specification or differentiation of one or more subsets of epicardial cell types.
Statistics
?
PSSM-Id: 381429
Aligned: 11 rows
Threshold Bit Score: 103.35
Created: 9-Jun-2011
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative DNAputative dimer
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:The N-terminal basic region of bHLH mediates high-affinity DNA-binding to specific hexanucleotide sequences
  • Comment:Based on the structure evidence that Mus musculus myoD (1MDY) basic region binds DNA.
  • Citation:PMID 8181063

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1         #   # ### #    #                 ####                  
O60682       108 QRNAANARERARMRVLSKAFSRLKTSLPWVPpDTKLSKLDTLRLASSYIAHLRQLL 163 human
NP_477302     32 QRNAANARERMRMRVLSSAYGRLKTKLPNIPpDTKLSKLDTLRLATLYIKQLITAV 87  fruit fly
XP_002408270  32 QRNAANARERARMRVLSKAFTRLKTSLPWVPeDTKLSKLDTLRLAAGYISHLKQVL 87  black-legged tick
NP_001158451  22 SRDAANARERTRMKILGKAFQKLKTTLPWVPsDTKLSKLDTLKLALRYIDYLNQVL 77  Saccoglossus kowalevskii
PIK57217     125 QRNAANARERSRMRVLSKAFTKLKTSLPWVPdDTKLSKLDTLRLAACYIAHLQRIL 180 Japanese sea cucumber
ESN99010      38 ERNAANERERARMRVLSRAFHRLKTSLPWVPpDTKLSKLDTLRLASCYIAHLSRML 93  Helobdella robusta
CCD77131      35 QRSAANARERSRMRVLSGAFVELKGALPWVPkDTKLSKLDTLKLAAGYIAYLRRIL 90  Schistosoma mansoni
XP_013396671  28 QRNAANARERARMRVLSRAFSKLKTTLPWVPpDTKLSKLDTLRLAASYIAHLSKIL 83  Lingula anatina
O43680        80 QRNAANARERARMRVLSKAFSRLKTTLPWVPpDTKLSKLDTLRLASSYIAHLRQIL 135 human
PVD23666      38 QRNAANARERSRMRVLSKAFSKLKTTLPWVPpDTKLSKLDTLRLASSYIAHLRQIL 93  Pomacea canaliculata
XP_002609895  72 QRNAANARERSRMRVLSKAFSKLKTTLPWVPpDTKLSKLDTLRLATSYISHMRQVL 127 Florida lancelet

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap