2XZM


Conserved Protein Domain Family
Ribosomal_S8e

?
cd11382: Ribosomal_S8e 
Click on image for an interactive view with Cn3D
Eukaryotic/archaeal ribosomal protein S8e (RPS8)
The eukaryotic/archaeal ribosomal protein S8 is a component of the small (40S in eukaryotes, 30S in archaea) ribosomal subunits and interacts tightly with 18S rRNA (16S rRNA in archaea, presumably).
Statistics
?
PSSM-Id: 211394
Aligned: 80 rows
Threshold Bit Score: 121.444
Created: 23-Nov-2011
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
18S rRNAS11 protein
Conserved site includes 61 residues -Click on image for an interactive view with Cn3D
Feature 1:18S rRNA binding interface [nucleic acid binding site]
Evidence:
  • Structure:2XZM: Ribosomal protein S8e from Tetrahymena thermophila binds the 18S rRNA in the 40S ribosomal subunit, contacts at 4 A

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1        # ####### ###### ####### ######              ##### #### #  ## ##    # # #  #####
2XZM_2         5 RDSKHKRRA-TGGRMPVHRKKRAFEKGRPISMTKLTtqsttiteKRRIRPVRVRGGHLKFRALRLCEGNFSWGseNITRK 83  Tetrahymena the...
Q3IN16         2 NHARSTKKR-TGGRRRAVRKKRKHELGSAPTETQVG--------DQKLKVVETHGGNAKVRAVAKNTASVATD--DGVEP 70  Natronomonas ph...
Q9YDY0         4 YQWRDKKKPsGGKRRYYYKVKRKYAAGRPPTYTTLSaa-----eEEERKPVRARGGSYKIKAKKVAFAVVSNPktGEARK 78  Aeropyrum pernix
YP_001541443   8 YQGNDSKKVtGGFRAKPYRVKRKALGGGPPTNTRLSn-------REKRLIERVTGGNVKIRLSEAGYANVFDKsnGTSKV 80  Caldivirga maqu...
BAJ47331       5 HSDLHKRKK-TGAKAHPARGRRKRERGGEINLVSLG--------EQKVVTRRVSGGNLKAAVLSTKTANVAVG--SVVKR 73  uncultured cren...
ADK26004       5 IENLAGRKM-TGGRKVAMRGRRKFEIDRYPNEAVVG--------PTQIVARRTRGNNIKAAFKTAEFANVVDKeaKKVTK 75  Candidatus Nitr...
ABZ08422       5 IENLHTSKI-TGGRRHVLRSRRKFEMDRFPNEALIG--------DQITITRKVRGKNIKTAIKTIDSVNLAID--SKIKR 73  uncultured mari...
EGQ42880       4 RHDRSKTKK-TGGKTRSYRKSRKYDLGSEFSSPSLG--------ETRTEKKDSRGNTEKNVVREENHANIPVD--GEVKN 72  Candidatus Nano...
YP_876336      5 VENLATSKL-TGGRRHPLRTRRKYEIDRYPNEALSG--------AQETVTRKVRGKRTKTALKTIDFVNLAVQg-AKVKK 74  Cenarchaeum sym...
EGQ39803       4 NHGRSTRTK-SGSRNRRYRKPRKHEMGSAFSAPQIGd-------EFRTEDKETRGGDKKNFVRTSDRVNLAVD--GEVKN 73  Candidatus Nano...
Feature 1                   #         ###                                                        
2XZM_2        84 TKILDVKYNAtNNELVRTKTLVKNSIVEIDstpfrewyklhygidlglkkdrtvlgnkeksrhvqkrvkrtkaqalekni 163 Tetrahymena the...
Q3IN16        71 ATIEDVAENPsNPNYVRRNIITKGAIIETD-------------------------------------------------- 100 Natronomonas ph...
Q9YDY0        79 ARILRIVETPaHREYARRGIIVKGAVIDTT-------------------------------------------------- 108 Aeropyrum pernix
YP_001541443  81 VKILRIIESPaNSDFVKKGIIVKGTIIETE-------------------------------------------------- 110 Caldivirga maqu...
BAJ47331      74 LEILRVVSNPsNRDYDRRKVITKGTLIETS-------------------------------------------------- 103 uncultured cren...
ADK26004      76 SKILKVNKNPaNRDYERRGVISKGAVIETE-------------------------------------------------- 105 Candidatus Nitr...
ABZ08422      74 VKIIKVLENAtNNDYQRRGVISKGAILETE-------------------------------------------------- 103 uncultured mari...
EGQ42880      73 VEIESVVDNPaNDNYVRRSLLTKGTIIQTS-------------------------------------------------- 102 Candidatus Nano...
YP_876336     75 SKIVKVLENPtNNDYRRRGVITRGAVLETE-------------------------------------------------- 104 Cenarchaeum sym...
EGQ39803      74 VDIQAVEDNPaNSEFVRRSLLTKGTIIQTT-------------------------------------------------- 103 Candidatus Nano...
Feature 1                     ######  # #    
2XZM_2       164 eeqfvsqRILACITSRPGQSGRADGYIL 191 Tetrahymena thermophila
Q3IN16       101 -------MGRARVTSRPGQDGQVNAVLV 121 Natronomonas pharaonis DSM 2160
Q9YDY0       109 -------LGRAVVTSRPGQEGVVNAVLL 129 Aeropyrum pernix
YP_001541443 111 -------LGRAVVTSRPGQDGVINAVKI 131 Caldivirga maquilingensis IC-167
BAJ47331     104 -------EGLARVTSSPGQDGTVNAVLV 124 uncultured crenarchaeote 10-H-08
ADK26004     106 -------SGTAVVVSRPGQDGVVNAVLV 126 Candidatus Nitrososphaera gargensis
ABZ08422     104 -------EGKCRVVSRPGQHGTVNAILV 124 uncultured marine crenarchaeote HF4000_APKG3B16
EGQ42880     103 -------EGEARITSRPGQEGVINAELV 123 Candidatus Nanosalina sp. J07AB43
YP_876336    105 -------DGRCRVVSRPGQDGAVNAVPI 125 Cenarchaeum symbiosum A
EGQ39803     104 -------EGKARITSRPGQDGNINAVSV 124 Candidatus Nanosalinarum sp. J07AB56

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap