2XZM


Conserved Protein Domain Family
Ribosomal_S8e_like

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cd11380: Ribosomal_S8e_like 
Click on image for an interactive view with Cn3D
Eukaryotic/archaeal ribosomal protein S8e and similar proteins
This family contains the eukaryotic/archaeal ribosomal protein S8, a component of the small ribosomal subunits, as well as the NSA2 gene product.
Statistics
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PSSM-Id: 211392
Aligned: 135 rows
Threshold Bit Score: 96.0494
Created: 5-Apr-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
18S rRNAS11 protein
Conserved site includes 57 residues -Click on image for an interactive view with Cn3D
Feature 1:18S rRNA binding interface [nucleic acid binding site]
Evidence:
  • Structure:2XZM: Ribosomal protein S8e from Tetrahymena thermophila binds the 18S rRNA in the 40S ribosomal subunit, contacts at 4 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        # ######  ##### ####  # ######              ##### #### #  ## ##    # # #  ##### 
2XZM_2         5 RDSKHKRRatGGRMPVHRKKraFEKGRPISMTKLttqsttiteKRRIRPVRVRGGHLKFRALRLCEGNFSWGseNITRKT 84  Tetrahymena the...
XP_783243    120 PLPKVRGQgeNEVFKVIRTGkrKTKAWKRMVTKVty-----vgEGFTRKPPKYERFIRPMALRFKKAHVTHPelKATFCL 194 purple urchin
EFX79446     120 PLPKVRAQseAEVFRVLKTGksRRKGWKRLVTKVcf-----vgEGFTRKPPKYERFVRPMALRFKKAHVTHPelKATFCL 194 common water flea
NP_955862    120 PLPKVRAQgeTEVLKVIRTGkrQKKAWKRMVTKVcf-----vgDGFTRKPPKYERFIRPMGLRFNKAHVTHPelKATFCL 194 zebrafish
XP_002111066 120 PLPKVRAVgeEEVFKVLRTGksRKKGWKRMITKAcy-----vgENFTRKPAKFERFIRPMGLRFKKAHVTHPelKATFCL 194 Trichoplax adha...
NP_001006579 120 PVPKVRAQgeTEVLKVIRTGkrKKKAWKRMVTKVcf-----vgDGFTRKPPKYERFIRPMGLRFKKAHVTHPelKATFCL 194 chicken
NP_001167492 120 PLPKVRAQgeTEVLKVIRTGkrKKKAWKRMVTKVcf-----vgDGFTRKPPKYERFIRPMGLRFKKAHVTHPelKATFCL 194 African clawed ...
AAG43048     120 PLPKVRAQgeTEVLKVIRTGkrKKKAWKRMVTKVcf-----vgDGFTRKPPKYERFIRPMGLRFKKAHVTHPelKATFCL 194 human
Q9QYU7       120 PLPKVRAQgeTELLKVIRTGkrKKKAWRRMVTKVcf-----vgDGFTRKPPKYEKFIRPMGLRFKKAHVTHPelKATFCL 194 Norway rat
XP_001626548 120 PLPKVRAVgeDEVFKVIKTGktRRKGWKRMVTKAcf-----vgDGFTRKPPKYERFIRPMGLRFKKAHVTHPelKATFCL 194 starlet sea ane...
Feature 1                  #         ###                                                         
2XZM_2        85 KILDVKYNAtNNELVRTKTLVKNSIVEIDstpfrewyklhygidlglkkdrtvlgnkeksrhvqkrvkrtkaqaleknie 164 Tetrahymena the...
XP_783243    195 PLIGVKKNPsSPMYTSLGVITKGTIIEVNvselgmvt------------------------------------------q 232 purple urchin
EFX79446     195 PIVGVKKNPsSPMYTSLGVITKGTIIEVNvselglvt------------------------------------------q 232 common water flea
NP_955862    195 PILGVKKNPsSSLYTTLGVITKGTVIEVNvselglvt------------------------------------------q 232 zebrafish
XP_002111066 195 PIIGVKKNPqSPMFTQLGVITKGTVVEVNvselglvt------------------------------------------q 232 Trichoplax adha...
NP_001006579 195 PILGVKKNPsSPLYTSLGVITKGTVIEVNvselglvt------------------------------------------q 232 chicken
NP_001167492 195 PILGVKKNPsSPLYTTLGVITKGTVIEVNvselglvt------------------------------------------q 232 African clawed ...
AAG43048     195 PILGVKKNPsSPLYTTLGVITKGTVIEVNvselglvt------------------------------------------q 232 human
Q9QYU7       195 PILGVKKNPsSPLYTTLGVITKGTVIEVNvselglvt------------------------------------------q 232 Norway rat
XP_001626548 195 PIIGVKKNPqSSLYTQLGVITKGTVVEVNvselglvt------------------------------------------q 232 starlet sea ane...
Feature 1                    ######  # #    
2XZM_2       165 eqfvsqRILACITSRPGQSGRADGYIL 191 Tetrahymena thermophila
XP_783243    233 ggkvvwGKYAQVTNNPENDGCINAVLL 259 purple urchin
EFX79446     233 ggkvvwGKYAQVTNNPENDGCINAILL 259 common water flea
NP_955862    233 ggkviwGKYAQVTNNPENDGCINAVLL 259 zebrafish
XP_002111066 233 ggkvvwGKYAQVTNNPENDGCINAVLL 259 Trichoplax adhaerens
NP_001006579 233 ggkviwGKYAQVTNNPENDGCINAVLL 259 chicken
NP_001167492 233 ggkvvwGKYAQVTNNPENDGCINAVLL 259 African clawed frog
AAG43048     233 ggkviwGKYAQVTNNPENDGCINAVLL 259 human
Q9QYU7       233 ggkviwGKYAQVTNNPENDGCINAVLL 259 Norway rat
XP_001626548 233 ggkvvwGKYAQVTNNPENDGCINAVLL 259 starlet sea anemone

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