3U6G,2LGE


Conserved Protein Domain Family
DUF4425

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cd11379: DUF4425 
Click on image for an interactive view with Cn3D
Uncharacterized protein conserved in Bacteroidetes
This family appears to form homodimers, the 3D structure has been determined by both NMR and X-ray crystallography.
Statistics
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PSSM-Id: 211391
Aligned: 5 rows
Threshold Bit Score: 139.22
Created: 24-Feb-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
Conserved Features/SitesClick to see Conserved Features Help
 
dimer interface
Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Structure:3U6G: DUF4425 (Bvu_3708) from Bacteroides vulgatus atcc 8482 forms homodimer, contacts at 4 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                        # # # # #                   ######                 ## # # # ###
3U6G_A        7 TGIHKIVIQQSGDTDSFEVSVSIGGAdkg-gpAKLYND-KGEYIGDSYSAQ---IRTATXSCCTNGNAFFXTCAGSVSSI 81  Bacteroides vulg...
2LGE_A       10 GAMYEVTIEQSGDFRSFIKSVVVVANg-----TQLKDGaTGESLASPVILSdeeLAVEKVTLSTTGKAIEFAVSGGVVDG 84  Parabacteroides ...
ZP_02032914  50 TGIHKIVVEQSGDIDAFELGLVFGAVnttsgpTKLYDE-DGKYLGESHSVTr--MEDAKVSCQTGDDAFFMTCAGSVTST 126 Parabacteroides ...
ZP_08447993  37 TGIHKIVVEQSGNTEDFEVNLVFGATnvn-gpARLYDE-NGEYLGDSYSVGk--MKSNRVSCQTGQDGFFMTCSGSATST 112 Capnocytophaga s...
ZP_02068317  33 TGVHKIVVEQSGNTDDFDLNIAFGAAntg-gvAKLYNE-NGEYLGDSYLVNk--VTENKISCQTGKEGSMMTCAGSVIST 108 Bacteroides ovat...
Feature 1                                         ### #     
3U6G_A       82 sea--gkRLHITVIGYIDDKEVNRLEKEYITDGNTLIETFSVST 123 Bacteroides vulgatus ATCC 8482
2LGE_A       85 edgvvnePMQWVVTVYKNGKEIEKKSLVFRDGKEISTDDLNLYY 128 Parabacteroides distasonis ATCC 8503
ZP_02032914 127 sdv-sgkKLKVLVTAYIDGKEVNQLVKEYETKGEILIENFSVST 169 Parabacteroides merdae ATCC 43184
ZP_08447993 113 see-sgkQLKVTIIAYVNGEETNRLVKEYTTQGEILMENFSLST 155 Capnocytophaga sp. oral taxon 329 str. F0087
ZP_02068317 109 seq-agkKLKISVIAYIDNKEVNRLEKEYITKGSTLVENFSVST 151 Bacteroides ovatus ATCC 8483

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