3CDJ,3H1C,3GCM


Conserved Protein Domain Family
RNase_PH_PNPase_1

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cd11363: RNase_PH_PNPase_1 
Click on image for an interactive view with Cn3D
Polyribonucleotide nucleotidyltransferase, repeat 1
Polyribonucleotide nucleotidyltransferase (PNPase) is a member of the RNase_PH family, named after the bacterial Ribonuclease PH, a 3'-5' exoribonuclease. Structurally, all members of this family form hexameric rings. In the case of PNPase the complex is a trimer, since each monomer contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction and in quality control of ribosomal RNA precursors. It is part of the RNA degradosome complex and binds to the scaffolding domain of the endoribonuclease RNase E.
Statistics
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PSSM-Id: 206768
Aligned: 45 rows
Threshold Bit Score: 317.922
Created: 24-Oct-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
trimerRNase E
Conserved site includes 35 residues -Click on image for an interactive view with Cn3D
Feature 1:trimer interface [polypeptide binding site]
Evidence:
  • Structure:3H1C; Escherichia coli polynucleotide phosphorylase trimer, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         ######    #        # # # #              # # #### ####  #####   
3CDJ_A        11 IVRKFQYGQHTVTLETGMMARQATAAVMVSMDdTAVFVTVVGQkkakpgqDFFPLTVNYQERTYAAGRIPGSFFRREGRP 90   Escherichia coli
3H1C_A         5 IVRKFQYGQHTVTLETGMMARQATAAVMVSMDdTAVFVTVVGQkkakpgqDFFPLTVNYQERTYAAGRIPGSFFRREGRP 84   Escherichia coli
NP_196962     53 FKEEFEVGSRVVSFETGKIARFANGSVVLGMDeTKVLSTVTCAktd-sprDFLPLTVDYQEKQYAQGLIPNTYMRREGAP 131  thale cress
XP_002976027   4 FEESVMIGPELLTFETGKLAQFAAGAVVCGAGeTKVLVTVVSDerldagrDFMPLQVEYREKSYAQGKIPNTFMRREGAP 83   Selaginella mo...
XP_001782634  85 FQEEAEVGNMKMSFETGKLARFASGAVVVGVGeTKVLVTVVADykfdggkDFLPLQVEYREKQYAQGKIPATFMRREGAP 164  Physcomitrella...
AAI23081      51 GAVTVDLGARKLEISSGKLARFADGCAVLKLGdSSVMVTAVSRtkp-spsQFMPLVVDYREKSAAAGRIPTNHLRREVGI 129  western clawed...
Q5RCW2        45 RAVAVDLGNRKLEISSGKLARFADGSAVVQSGdTAVMVTAVSKtkp-spsQFMPLVVDYRQKAAAAGRIPTNYLRREIGT 123  Sumatran orang...
ADK26666      27 SCNRFFLSFRKMELSSGKLAKFADGSAVVQLGdTAVMVTAVSKtkp-spsQFMPLVVDYRQKAAAAGRIPTNYLRRELGS 105  Zonotrichia al...
XP_788673    225 ARIETMAKTDPLILSTGELAKLADGCATAQIGdTTVMVTAVSKkns-sspGFLPLTVDYRQKAAAAGRIPTNHLRRERGV 303  purple urchin
AEO33918      55 WTEVQLSNDQTLRLSAGRLAKFADGSAVAQIGdTSVMVTVVSKhkpspsaSFLPLVVDYRQKAAAAGRIPTNFLRRELGP 134  Amblyomma macu...
Feature 1        #                        # # #   #####                                          
3CDJ_A        91 SEGETLIARLIDRPIRPLFPegfvNEVQVIATVVSVNPqvNPDIVAMIGASAALSLSGIPFnGPIGAARVGyiNDQYVLN 170  Escherichia coli
3H1C_A        85 SEGETLIARLIDRPIRPLFPegfvNEVQVIATVVSVNPqvNPDIVAMIGASAALSLSGIPFnGPIGAARVGyiNDQYVLN 164  Escherichia coli
NP_196962    132 KERELLCGRLIDRPIRPLFPtgfyHEVQIMASVLSSDGkqDPDILAANASSAALMLSDVPWgGPIGVIRIGriCGQFVVN 211  thale cress
XP_002976027  84 KERELLCGRVIDRSIRPLFPkgyyFETQIMANVLCSDGeqDPDILAANAASAALALSDVPWnGPIGVVRIGrvDGKFVVN 163  Selaginella mo...
XP_001782634 165 KERELLCGRLIDRSVRPLFPkgffYDSQIIANVLCSDGdqDPDVLAVNAASAALVISDIPWkGPIGCVRIGrvKGKFIVN 244  Physcomitrella...
AAI23081     130 TPDEILTSRIIDRSVRPLFPagyfYETQILCNLLAVDGvnKPDVLAINGASAALALSDIPWnGPVGAVRVGlvDGEFIIN 209  western clawed...
Q5RCW2       124 SDKEILTSRIIDRSIRPLFPagyfYDTQVLCNLLAVDGvnEPDVLAINGASVALSLSDIPWnGPVGAVRIGiiDGECVVN 203  Sumatran orang...
ADK26666     106 TDKEILTSRVIDRSIRPLFPagyfYDTQILCNLLAVDGvnDPDILAINGASAALALSDIPWnGPIGAVRVGlvDGETVIN 185  Zonotrichia al...
XP_788673    304 TDQEILTSRMIDRSIRPLFPkgffYDTQVMCNLLAVDGlqDPGVISINGASAALALSDVPWnGPIGAVRVGliDEEVMIN 383  purple urchin
AEO33918     135 TEKEILTSRVIDRSLRPLFPagyfYETQLVCNLLAVDGinDPDIVSINAASAALSLSDVPWnGPIGAVRVGliDGDVVIN 214  Amblyomma macu...
Feature 1                                                                              
3CDJ_A       171 PTQDELkesKLDLVVAGTEa-AVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKeaGKPRWDW 239  Escherichia coli
3H1C_A       165 PTQDELkesKLDLVVAGTEa-AVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKeaGKPRWDW 233  Escherichia coli
NP_196962    212 PTMDELsssDLNLIYACTRd-KTMMIDVQSREISEKDLAAALRLAHPEAVKYLDPQIRLAEkaGKQKKEY 280  thale cress
XP_002976027 164 PDMDTLsgsDLNLIYSCTAe-RSLMIETQAREITNKDFTAALKLAHSEASKLIEPQRRLAAkvGNRKRPV 232  Selaginella moellendorffii
XP_001782634 245 PNMDEFslsDLNLVYACTAe-KTVMIETQAREITNQDYVAALHLAHAEATKLIPPQLELAAkvAVLKRPL 313  Physcomitrella patens su...
AAI23081     210 PTRKEMsssLLNLVIAGGVqsQIVMMEAAAENVLQQDFCHAVKLGVKHSQQIIQGIQQLAKehGKEKRTI 279  western clawed frog
Q5RCW2       204 PTRKEMsssTLNLVVAGAPksQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKetGVTKRTP 273  Sumatran orangutan
ADK26666     186 PTRKEMassTLNLVVAGAAqnQVVMLEATAENILQQDFCHAIKVGVKQTQHIIQGIQQLVKerGVVKRTV 255  Zonotrichia albicollis
XP_788673    384 PTRLDMrrsTINMVVAGTKksNLVMVEASADNVLQTDFLKALKAGLKETQIIVRSIEKLARehGKEKREY 453  purple urchin
AEO33918     215 PTRRQMtqsVLNLVVAGXEhnQVVMLEASADNVLIQDFQKAVRCGVKETQHIVRQIQQFQEacGRPKRAV 284  Amblyomma maculatum

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