1U2C


Conserved Protein Domain Family
alpha_DG_C

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cd11305: alpha_DG_C 
Click on image for an interactive view with Cn3D
C-terminal domain of alpha dystroglycan
Dystroglycan is a glycoprotein widely distributed in skeletal muscle and other tissues; the pre-protein is cleaved into two subunits (alpha and beta) that form a complex which links the extracellular matrix to the cytoskeleton. This C-terminal domain of the alpha-subunit appears to contact neighboring cadherin-like repeats of alpha dystroglycan, and may also be involved in interactions with other components of the dystrophin-dystroglycan-complex (DGC). DGC has been shown to interact with extracellular matrix components such as laminin, perlecan and m-agrin, suggesting that the complex may play various different roles depending on the extracellular ligand.
Links
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Statistics
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PSSM-Id: 206765
Aligned: 15 rows
Threshold Bit Score: 142.853
Created: 6-Jan-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
CA-like domain
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:CA-like domain interface [polypeptide binding site]
Evidence:
  • Structure:1U2C: The C-terminal domain of mouse alpha-dystroglycan binds a neighboring cadherin-like repeat, contacts at 4 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           ##   ## ##  #             #######                             
1U2C_A        122 ACAADEPVTVLTVILDADLTKMTPKQRIDLLNRMQSFSev---eLHNMKLVPVVn--nRLFDMs--aFMAGPGNAKKv-v 193  house mouse
XP_974516     124 RCPSTEDNTVLILLIDKGVRAIKPKQRVIAVNNVAKFFgl---pYSAFTLKPQLek-dDITDSs--vVLAGPGNFKPk-s 196  red flour beetle
EFN86632      180 HCDDDEEQTILTVLLDARLDRLSPRARVDAIENLAGFLg-----MHKSAFSMHSq---TKHDNmlsvLFGGHGNVPYhre 251  Harpegnathos ...
XP_001946237  123 RCKNTEDSILLCLVIGMNFKSIQPLQRLIALKNLAGFLsl---pQDAVLLVPQEsvssWLIDYl---VTSERQSHKKhqf 196  pea aphid
XP_002122003  194 QCAPSEPIVTIAVTLDVNQEQLDPHKRVELIQKFAKYLips-lnPSAITLSFQDt---GRHHA----FLSGHGNVAVtpl 265  Ciona intesti...
XP_002599794  324 VCLPGEPFTMVTVIVDADPDKLYPKDKLKLLSGMKAHMkv---pLDFLKLLPMGn--kRILDAs--aFMAGPGNVKQa-k 395  Florida lancelet
XP_002737043  214 KCTDGEPEALATIILDANWSKMTPKHRVHSVERMAEYSgf---dKNLFKLLPAGk--dGLFNSn--aLVAGPGNIKHq-n 285  Saccoglossus ...
XP_786589     164 VCPPEKPAVRATIILDADWSLLTPQERINMVSKLSKYSri---pMTAFKLLPEKd---DNKGYq--aLAAGSGNIATa-k 234  purple urchin
XP_001621569  648 VCHSGLPVEAATIIFDLHAEKVDGKGRCALMKRVAEFAdeavesLHFSLGKGHNta-lGLKDVq--mLTAGPGNVQDa-r 723  starlet sea a...
XP_002415407  111 SCPAGNPVAMATVTVDADANDLRPHERARLLTGLARFLev---aVAEASMAPMApd-ePAYDNs--aLMAGAGDSPSr-l 183  black-legged ...
Feature 1                                                               
1U2C_A        194 ENGALLSWKLGCSLnq--nSVPDIRGVETPAREGAMSAQLgYPVVGWHIANKKP 245  house mouse
XP_974516     197 AKSTSVKVAVGCDGrlwvqTAPLVHQLKQQARDGTISEVLgLPLIGWRVKTEPK 250  red flour beetle
EFN86632      252 MFLTTIQWQVGCDGhlwrhQVELIRQLREQAKDGTLAEVLqLPVILWRVKTDSS 305  Harpegnathos saltator
XP_001946237  197 NDTSFVLWEVGCGGdilqeHIDHVRQMQSNTVDGTLSEVLqLPVTSWRLVNSLN 250  pea aphid
XP_002122003  266 VTGTTLSWPIACGSds--aELSGLDDIEESSRNGSLAHVLgYDVIQWRAENRKP 317  Ciona intestinalis
XP_002599794  396 TEGMLLSWTVGCGSdt--sNLRGVNRVEETAKSGEMARDLgHDVIGWHVTSPKP 447  Florida lancelet
XP_002737043  286 YPGILLSWPVGCGYdv--nKLPVVMVIESTAKDGGLAKNIgHDVIGWHISHPQQ 337  Saccoglossus kowalevskii
XP_786589     235 HEGLSLSWVVGCGRni--dQLPVVTILEGASKDGSMAEKLnYDIKGWYVSSNTP 286  purple urchin
XP_001621569  724 QPGLVISWQIGCGIdl--aGTRVASLLKSSAETGAFHEALsAPVTGWHVATGFP 775  starlet sea anemone
XP_002415407  184 TAGLRLRWRVGCSSdvephHAAALKRLEASAEDGSLARLLgHPVVGWHVSSVQP 237  black-legged tick

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