Conserved Protein Domain Family
Sema_6D

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cd11269: Sema_6D 
The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
Sema6D is expressed predominantly in the nervous system during embryogenesis and it uses Plexin-A1 as a receptor. It displays repellent activity for dorsal root ganglion axons. Sema6D also acts as a regulator of late phase primary immune responses. In addition, Sema6D is overexpressed in gastric carcinoma, indicating that it may have an important role in the occurrence and development of the cancer. Sema6D is a member of the class 6 semaphorin family of proteins, which are membrane associated semaphorins. Semaphorins are regulatory molecules involved in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module.
Statistics
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PSSM-Id: 200530
Aligned: 5 rows
Threshold Bit Score: 1036.14
Created: 7-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
plexin bindinghomodimer
Feature 1:plexin binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of mouse Semaphorin 6A to Plexin A2

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                     ####                
XP_003209497   49 SGNESQHRLDFQLMLKIRDTLYIAGRDQVYTVNLNEvPKSEVTPSRKLTWRSRQQDRENCAMKGKHKDECHNFIKVFVPR 128  turkey
NP_001089133   49 SGNDSQHSLDFQLMLKIRDTLYVAGRDQVYSINLNEvPKTELTPSRRLTWRSGQADRKNCAMKGKHKDECHNYIKVFVPR 128  African clawe...
Q8NFY4         49 SGNESQHRLDFQLMLKIRDTLYIAGRDQVYTVNLNEmPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHNFIKVFVPR 128  human
NP_001017682   51 SGNESQHRLDFQLMTQIHDTLFIAGRDQVYLVSLREsYRNEIIPYRKLTWRSGQADRETCAMKGKHRDECHNFIKVLVPR 130  zebrafish
XP_001231890   49 SGNESQHRLDFQLMLKIRDTLYIAGRDQVYTVNLNEvPKSEVTPSRKLTWRSRQQDRENCAMKGKHKDECHNFIKVFVPR 128  chicken
Feature 1                                           ##                        # ##      #         
XP_003209497  129 NDEMVFVCGTNAFNPMCRYYRLstldYDGEEISGLARCPFDARQTNVALFADGKLYSATVADFLASDAVIYRSMGDGsAL 208  turkey
NP_001089133  129 NDEMVFVCGTNAFNPMCRYYRLntfeYDGEEISGLARCPFDARQTNVALFADGKLYSATMADFQASDAVIYRSMGDGfAL 208  African clawe...
Q8NFY4        129 NDEMVFVCGTNAFNPMCRYYRLstleYDGEEISGLARCPFDARQTNVALFADGKLYSATVADFLASDAVIYRSMGDGsAL 208  human
NP_001017682  131 NDDLVFICGTNGFNPMCRYYRLdnleFDGEEISGLARCPFDAKQTNVALFADGKLYSATVADFLASDAVIYRSMGDGsAL 210  zebrafish
XP_001231890  129 NDEMVFVCGTNAFNPMCRYYRLstleYDGEEISGLARCPFDARQTNVALFADGKLYSATVADFLASDAVIYRSMGDGsAL 208  chicken
Feature 1             ###    #                                              ##  #                 
XP_003209497  209 RTIKYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNIGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPG 288  turkey
NP_001089133  209 RTIKYDSKWLKEPHFLHAIEYGNYIYFFFREIAVEHNNLGKAVHSRVARICKNDLGGSQRVLEKHWTSFVKTRLNCSVPG 288  African clawe...
Q8NFY4        209 RTIKYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPG 288  human
NP_001017682  211 RTIKYDSKWLKEPHFLHAVDYGDFVYFFFREIAAEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFVKARLNCSVPG 290  zebrafish
XP_001231890  209 RTIKYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPG 288  chicken
Feature 1                                                                                         
XP_003209497  289 DSFFYFDVLQSITDIIEINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPG 368  turkey
NP_001089133  289 DSFFYFDVLQSITDIIEINGIPTVLGVFTTQLNSIPGSAVCAFTMDDIEKVFRGRFKEQKTPDSVWTAVPEDRVPKPRPG 368  African clawe...
Q8NFY4        289 DSFFYFDVLQSITDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPG 368  human
NP_001017682  291 ESFFYFDVLQAITDIIDINGVPSVVGVFTTQLNSIPGSAVCAFSMVDIEKAFRGRFKEQKTPDSVWTPFPEEKLPKPRPG 370  zebrafish
XP_001231890  289 DSFFYFDVLQSITDIIEINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPG 368  chicken
Feature 1                                  #                                                      
XP_003209497  369 CCAKHGLAEAYKtSIDFPDETLSFIKSHPLMDSAVPSIiEEPWFTKTRVRYRLTAIAVDHAAGPHQNYTVIFVGSEAGVV 448  turkey
NP_001089133  369 CCARHGFGEGYRaSTEFPDETLSFIKSHPLMDSAIPSIiEEPWFTKTRVRYRLTAVAVDHLAGPHLNYTVMFVGSEAGVV 448  African clawe...
Q8NFY4        369 CCAKHGLAEAYKtSIDFPDETLSFIKSHPLMDSAVPPIaDEPWFTKTRVRYRLTAISVDHSAGPYQNYTVIFVGSEAGMV 448  human
NP_001017682  371 CCAGHGSAESYKtSIEFPDETLQFIKSHPLMDASVPSIgDEPWFTKTRVRYRLTALAVDNTAGPHKNYTVVFIGSEAGIV 450  zebrafish
XP_001231890  369 CCAKHGLAEAYKtSIDFPDETLSFIKSHPLMDSAVPSIiEEPWFTKTRVRYRLTAIAVDHAAGPHQNYTVIFVGSEAGVV 448  chicken
Feature 1                                                                          
XP_003209497  449 LKILAKTRPFSlnDSVLLEEIEAYNHAKCNAENEDDRRVISLQLDRDHHALFVAFSsCVIRIPLS 513  turkey
NP_001089133  449 LKILAKTNPFSlnDSVLLEEIDAYNRAKCSGNSEEDRKVISLQMDRDHHALFVAFSgCIVRLPLS 513  African clawed frog
Q8NFY4        449 LKVLAKTSPFSlnDSVLLEEIEAYNHAKCSAENEEDKKVISLQLDKDHHALYVAFSsCIIRIPLS 513  human
NP_001017682  451 LKVLAKTSPLSlnDSVLLEEIDVFNQAKCLSSNEDDRRILSFHLDKDSHTLYVAFSsCVVRIPLS 515  zebrafish
XP_001231890  449 LKILAKTRPFSlnDSVLLEEIEAYNHAKCNAESEEDRRVISLQLDRDHHALFVAFSsCVVRIPLS 513  chicken

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