3OKW,3OKY


Conserved Protein Domain Family
Sema_6A

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cd11266: Sema_6A 
Click on image for an interactive view with Cn3D
The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
In the cerebellum, Sema6A-plexin A2 signaling modulates granule cell migration by controlling centrosome positioning. Besides plexin A2, plexin A4 is also found to be a receptor of Sema6A. Interactions between plexin A2, plexin A4, and Sema6A control lamina-restricted projection of hippocampal mossy fibers. It is required for the clustering of boundary cap cells at the PNS/CNS interface and thus, prevents motoneurons from streaming out of the ventral spinal cord. At the dorsal root entry site, it organizes the segregation of dorsal roots. Sema6A may also be involved in axonal pathfinding processes in the periinfarct and homotopic contralateral cortex. Sema6A is a member of the class 6 semaphorin family of proteins, which are membrane associated semaphorins. Semaphorins are regulatory molecules involved in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module.
Statistics
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PSSM-Id: 200527
Aligned: 6 rows
Threshold Bit Score: 1030.75
Created: 8-Apr-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
plexin bindinghomodimer
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:plexin binding site [polypeptide binding site]
Evidence:
  • Structure:3OKY; Mouse Semaphorin 6A binds Plexin A2; contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                     ####                
3OKW_A         33 RNTTQRHRLDIQMIMIMNRTLYVAARDHIYTVDIDTsHTEEIYCSKKLTWKSrqaDVDTCRMKGKHKDECHNFIKVLLKK 112  house mouse
XP_003223081   48 HNTPQRHKLDIQLLMIMERTLYIAARDHIYTVDIDTsHTEEIYFSKKLTWKSrqlDVDTCRMKGKHKDECHNFIKVFLKR 127  green anole
NP_065847      48 RNTTQRHRLDIQMIMIMNGTLYIAARDHIYTVDIDTsHTEEIYCSKKLTWKSrqaDVDTCRMKGKHKDECHNFIKVLLKK 127  human
XP_002931763   48 RNSTQRHKMDIQQIVIMNRTLYIAARDHIYTVDLETsYTEEIFFSKKLTWKSkqsDVDTCRMKGKHKDECHNFIKVLLKR 127  western clawe...
XP_424960      48 RNTTQRHRLDIQLVTVMNRTLYIAARDHIYTVDMDTsHTEEIYFSKKLTWKSrqaDVDTCRMKGKHKDECHNFIKVLLKR 127  chicken
3OKY_B         33 RNTTQRHRLDIQMIMIMNRTLYVAARDHIYTVDIDTsHTEEIYCSKKLTWKSrqaDVDTCRMKGKHKDECHNFIKVLLKK 112  house mouse
Feature 1                                           ##                        # ##      #         
3OKW_A        113 NDDTLFVCGTNAFNPSCRNYRvdtletfGDEFSGMARCPYDAKHANIALFADGKLYSATVTDFLAIDAVIYRSLGDsPTL 192  house mouse
XP_003223081  128 SDDTLFICGTNAFSPSCRNYKmdtlefmGEEFSGMARCPYDAKHANVALFAEGKLYSATVTDFLAIDAVIYRSLGDsPTL 207  green anole
NP_065847     128 NDDALFVCGTNAFNPSCRNYKmdtlepfGDEFSGMARCPYDAKHANVALFADGKLYSATVTDFLAIDAVIYRSLGEsPTL 207  human
XP_002931763  128 DEDTLFVCGTNAFNPSCRYYKmdtleflDEEISGMARCPYDAKHANVALFADGKLYSATVTDFLAIDAVIYRSLGDgPTL 207  western clawe...
XP_424960     128 NEDTLFICGTNAFNPSCRNYKmdtleflGDEFSGMARCPYDAKHANVALFAEGKLYSATVTDFLAIDAVIYRSLGEsPTL 207  chicken
3OKY_B        113 NDDTLFVCGTNAFNPSCRNYRvdtletfGDEFSGMARCPYDAKHANIALFADGKLYSATVTDFLAIDAVIYRSLGDsPTL 192  house mouse
Feature 1             ###    #                                              ##  #                 
3OKW_A        193 RTVKHDSKWLKEPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPG 272  house mouse
XP_003223081  208 RTVKHDSKWLKEPYFVHAVDYGNYIYFFFREIAVEYHSMGKVIFPRVARVCKNDMGGSQRVLEKQWTSFLKARLNCSVPG 287  green anole
NP_065847     208 RTVKHDSKWLKEPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPG 287  human
XP_002931763  208 RTVKYDSKWLKEPYFVHAVDYGDLIYFFYREIAVEYNSMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPG 287  western clawe...
XP_424960     208 RTVKHDSKWLKEPYFVQAVDYGNYIYFFFREIAVEYNSMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPG 287  chicken
3OKY_B        193 RTVKHDSKWLKEPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPG 272  house mouse
Feature 1                                                                                         
3OKW_A        273 DSHFYFNILQAVTDVIRINGRDVVLATFSTPYNSIPGSAVCAYDMLDIANVFTGRFKEQKSPDSTWTPVPDERVPKPRPG 352  house mouse
XP_003223081  288 DSHFYFNILQAVTDVVHINGRNIVLATFSTPYNSIPGSAVCAYDILDIANVFTGRFKEQKSPDSIWTPVPDERVPKPRPG 367  green anole
NP_065847     288 DSHFYFNILQAVTDVIRINGRDVVLATFSTPYNSIPGSAVCAYDMLDIASVFTGRFKEQKSPDSTWTPVPDERVPKPRPG 367  human
XP_002931763  288 DSHFYFNILQAVTDVIHINGRDVVLATFSTPYNSIPGSAVCAYDMADIASVFTGRFKEQKSPDSTWTPVPDERVPKPRPG 367  western clawe...
XP_424960     288 DSHFYFNILQAVTDVIHFNGRDVVLATFSTPYNSIPGSAVCAYDMLDIASVFTGRFKEQKSPDSTWTPVPDERVPKPRPG 367  chicken
3OKY_B        273 DSHFYFNILQAVTDVIRINGRDVVLATFSTPYNSIPGSAVCAYDMLDIANVFTGRFKEQKSPDSTWTPVPDERVPKPRPG 352  house mouse
Feature 1                                  #                                                      
3OKW_A        353 CCAGSSSLEKYATSNEFPDDTLNFIKTHPLMDEAVPSIiNRPWFLRTMVRYRLTKIAVDNAAGPYQNHTVVFLGSEKGII 432  house mouse
XP_003223081  368 SCAGSTLLEKYTSSNEFPDDTLNFIKTHSLMDEAVPSIvNKPWFLRTMVRYRLTKIAVDNAAGPNQNHTVVFLGSEKGII 447  green anole
NP_065847     368 CCAGSSSLERYATSNEFPDDTLNFIKTHPLMDEAVPSIfNRPWFLRTMVRYRLTKIAVDTAAGPYQNHTVVFLGSEKGII 447  human
XP_002931763  368 CCAGSATVERITKSNELPDDTLNFIKTHPLMDEAVPSViNRPLFLRTMVRYRLTKIAVDTAAGPYQNHTVVFLGSERGIV 447  western clawe...
XP_424960     368 CCAGSTSLEKYATSSEFPDDTLNFIKTHPLMDEAVPSIvNRPWFLRTMVRYRLTKITVDSAAGPYKNYTVVFLGSEKGII 447  chicken
3OKY_B        353 CCAGSSSLEKYATSNEFPDDTLNFIKTHPLMDEAVPSIiNRPWFLRTMVRYRLTKIAVDNAAGPYQNHTVVFLGSEKGII 432  house mouse
Feature 1                                                                           
3OKW_A        433 LKFLARIGSSGFLnGSLFLEEMNVYNPEKCSyDGVEDKRIMGMQLDRASGSLYVAFStCVIKVPLG 498  house mouse
XP_003223081  448 LKFLVRTGTSGFLnDSLFLEEMSIYNSEKCSyDGVEDKRIVGMQLDKQSSALYVAFSnCLIRVPLG 513  green anole
NP_065847     448 LKFLARIGNSGFLnDSLFLEEMSVYNSEKCSyDGVEDKRIMGMQLDRASSSLYVAFStCVIKVPLG 513  human
XP_002931763  448 LKFLARTGYSGFLsDSLFLEEMNVYNSEKCSfDGAEDKRILGMQLDKHNNALYVAFStCVVSVPLA 513  western clawed frog
XP_424960     448 LKFLARTGNSGFLnDSLFLEEMNIYNPEKCSyDGMEDKRIVAMQLDKPSSALYVAFStCVIKVPLG 513  chicken
3OKY_B        433 LKFLARIGSSGFLnGSLFLEEMNVYNPEKCSyDGVEDKRIMGMQLDRASGSLYVAFStCVIKVPLG 498  house mouse

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