Conserved Protein Domain Family
Sema_5C

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cd11265: Sema_5C 
The Sema domain, a protein interacting module, of semaphorin 5C (sema5C)
In Drosophila, Sema5C was identified as an early development gene, which is expressed in stage 2 embryos with a striped pattern emerging at later stages. Sema5c may play a role in odor-guided behavior and in tumorigenesis. Sema5C belongs to class 5 semaphorin family of proteins, which are transmembrane glycoproteins characterized by unique thrombospondin specific repeats in the extracellular region of the protein. Semaphorins are regulatory molecules involved in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module.
Statistics
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PSSM-Id: 200526
Aligned: 7 rows
Threshold Bit Score: 728.116
Created: 7-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative plexinputative
Feature 1:putative plexin binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of semaphorins 6A and 4D to their receptor plexins A2 and B1, respectively

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                ####                     
EFZ11332       88 FYLEIPGTSSRHLLQA----VAFLGRDNLYRLTLTsLTDLEHASWSAPEDKVNTCQNKGQSVEDCRNYVKVLLSNGK-SL 162  red fire ant
ACZ94701       63 FYDPETTWYSEMLFDVarnqVIVGARDTLYRMSFD-LEPLERASWGATPSEIAMCQAKGQSERWCRNYVRVLHSYGEnQL 141  fruit fly
EFX77132        8 VSPSSVLHYSLNILDFsfviFDHNRRDYLFRLSLDgLALLEESRWPAADEVVRLCQDKGQSEDDCHNYIRVLHVHGE-RI 86   common water ...
NP_611293      65 FYDPETTWYSEMLFDVarnqVIVGARDTLYRMSFD-LEPLERASWGATPSEIAMCQAKGQSERWCRNYVRVLHSYGEnQL 143  fruit fly
EAA07529       15 FTDPNVTSYARMLIDVsgdqLIVGARDNLFRFSLR-LEEIERAPWEVPVSMRALCLQKGQSDEACHNYVMVLQSYGS-QV 92   Anopheles gam...
XP_001945557   36 FSEDGVTSYSQLLFDIarkqVVVGARDNIYRLDLDdLKKIEAAHWPAAEEKVQLCLVKGQSVDDCHNYVKVLLSTGK-RL 114  pea aphid
EFA12053       42 FSQDEVVSYSQMLFDVarnqVLVGARDVLFRLSLTkLELLESAEWPASTDKRIECINKGQSDEFCHNYIKILLTNGK-NL 120  red flour beetle
Feature 1                                      ##   #                         # ##      #         
EFZ11332      163 FTCGTYAFSPWCAWREIENITsVTSEMSGVAMCPYSPHANVTALLSrg--pSGGLFAGAPTDFSGADPAIYRTLASPN-- 238  red fire ant
ACZ94701      142 YACGTNAFQPSCSWRQMENLT-VTGVDSGVVKCPFHPQANSTSLLQs----NGQLFVGTATDFSGSDVAILRTGVESNkr 216  fruit fly
EFX77132       87 LACGTNAFSPRCSWRPVEAIDvVSEWSSGVARCPYSPHSHISSLLSsgptgSADLYIGSPTDFSGQDNAIYRLPLPSSas 166  common water ...
NP_611293     144 YACGTNAFQPSCSWRQMENLT-VTGVDSGVVKCPFHPQANSTSLLQs----NGQLFVGTATDFSGSDVAILRTGVESNkr 218  fruit fly
EAA07529       93 YACGTHAFNPRCTVRHMEDLS-VTRNDDGVAKCPFNPNANMTALMSe----SGQLFVGSATDFSGLDSAIMRSDITENns 167  Anopheles gam...
XP_001945557  115 FACGTGAFSPQCTWREMENANsVTDTVRGVGKCPYSPLSNITAMITl----NGQYFAGSPMDFSGADSAIVRDLGASY-- 188  pea aphid
EFA12053      121 FVCGTNAFSPQCSTRKIENVSdVTEWVDGLAKCPYNPAANITGFMSe----RGEYYFGGPTDFSSSDFVFSKNVGTVT-- 194  red flour beetle
Feature 1                          #  ## #    #                     #                       #### #
EFZ11332      239 ----------------LRTRQYDSKWLNDPQFVGSFETEDHVYFLFRESAVEYINCGKKIYSRIARVCKNDRGGQIMM-K 301  red fire ant
ACZ94701      217 ---------------fLRTKQYNNNWLSGAQFVGSFEAGHFVYFLLRESAAEHMSCGKVIYSRVARVCKNDVGGGGQLlR 281  fruit fly
EFX77132      167 ssagssatpqhiikgrLRTMQYNAMWLNVPDFVGSVEADNFVYFFFREAAVEFSNCGKAVYSRVARVCKNDLGGGQLMlK 246  common water ...
NP_611293     219 ---------------fLRTKQYNNNWLSGAQFVGSFEAGHFVYFLLRESAAEHMSCGKVIYSRVARVCKNDVGGGGQLlR 283  fruit fly
EAA07529      168 --------------riLRTVQYNSLWLNEPQFAGSFEHGGFIYFVLREAAVEYMNCGKIIYSRIARVCKNDAGGTPGIlK 233  Anopheles gam...
XP_001945557  189 ----------------LRTKNYDAKWLNEPQFVGSFETDAYVYFLFRESAVEYINCGKRVYSRIARMCKNDVGGQTML-R 251  pea aphid
EFA12053      195 ----------------IRTKQYNSFLLNDPQFVGTFETENFVYFLFRETAVEYMNCGKTIYSRIARVCKNDPGGHTML-K 257  red flour beetle
Feature 1          #                                                                              
EFZ11332      302 DVWTTFSKARLNCSLPGEFPFYYDEIQGAAYHPEEGIIYATFTTPINGIAGSAICAFNMSAVFVSFNGPFKYQENAGAAW 381  red fire ant
ACZ94701      282 DNWTSFLKARLNCSLPGEYPYYFDEIQGMTYAESESILYATFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQQEHSDAAW 361  fruit fly
EFX77132      247 DTWTTFLKARLNCSLPAEYPFYYDHIQSVTFLEEERLFYATFTTSENSIAGSAVCSFTLDSMQETFAGPFRSQSSPTSTW 326  common water ...
NP_611293     284 DNWTSFLKARLNCSLPGEYPYYFDEIQGMTYAESESILYATFRTSGSSIFGSAVCAYNLSSINAAFDGPFKQQEHSDAAW 363  fruit fly
EAA07529      234 DNWTSFVKARLNCSLPGDYPFYYNEVQGMVYSQDEGVLYATFTTPENSIHGSAICAYNMSAIQAAFDGAFKHQESKGAAW 313  Anopheles gam...
XP_001945557  252 DNWTTFIKARLNCSLPGDYPFYFDEIQGMTYLPDEGLVYATFTTPSNGIAGSAVCSFNLTAINAAFNGPFKHQASVGSEW 331  pea aphid
EFA12053      258 DNWTTFLKARLNCSVSGEYPFYFDEIQSMAYVPDENMVYATFTTPSNSIAGSAICAFNLSSIEAAFAGPFKYRENMDSAW 337  red flour beetle
Feature 1                               #   #  #                                                  
EFZ11332      382 ERRPvahhnrqr--cgspsstaPHQIMDNQRYQLMDEAVQSTMl------EPLHTATLERFIHIAVDVTPTKLHRsVTVL 453  red fire ant
ACZ94701      362 KTVNtnqrsqf-----qcgtssIGHWLESSRYQLMDEAVQPIGa------EPLYHSKLEQFGRLALDIINTKTEQ-VHVL 429  fruit fly
EFX77132      327 ESVHsthahshcsshhpahsssSSSLLEAEKYQLMDRAVQPIFrpgksgnGPLIRLDLERFSHIAVDVVATKIHSfVHVL 406  common water ...
NP_611293     364 KTVNtnqrsqf-----qcgtssIGHWLESSRYQLMDEAVQPIGa------EPLYHSKLEQFGRLALDIINTKTEQ-VHVL 431  fruit fly
EAA07529      314 RAQDvsnrdhyec-rngspsgrHMSLIESSKYQLMDQAIQPITg------RPLHHTALERLSHIAIDIIPTKLHErVHII 386  Anopheles gam...
XP_001945557  332 IRYNpphqlnh----ghcqrqdPNQILDSSRYQLMDNAVQPTTm------DPLYYKPLEILTHIAVDVVPTKPHGsLKVL 401  pea aphid
EFA12053      338 GQYNvhhrdhf----nckssprSSHLLETSKYQLMDSAVQATTl------NPLHVAQLERFTHITIDVLSTKIHTsVHVI 407  red flour beetle
Feature 1                                                                              
EFZ11332      454 YVSTATGLIKKISVLPRTQ--ETCIVEIWGSLp-------SPPMTLQFLKDTQSLYVGMEIGLLRIPAV 513  red fire ant
ACZ94701      430 FVASSGNHIKKLSVKYDGDgvQTCLVELWQADdt----gtSSLLNMAYLKVSDSLYLGTDLALTRIPAQ 494  fruit fly
EFX77132      407 YVASRDGLVRKYSVLPRTQ--EACLVEIIDPLalssqladRQIKTMQFLKQQNALYIGTENEVIRLGAS 473  common water flea
NP_611293     432 FVASSGNHIKKLSVKYDGDgvQTCLVELWQADdt----gtSSLLNMAYLKVSDSLYLGTDLALTRIPAQ 496  fruit fly
EAA07529      387 YVATDGGTIKKISVLPRTK--DTCVIEIWQPEer----pdTPIKVMQYVKDTESLYVGTERALMRIPAN 449  Anopheles gambiae str. PEST
XP_001945557  402 YVATTEGTVKKITILPKSS--ATCTLEEWNIFpeg---sgSQIMALHYLKVTDSIYVGTRDRVLKIPAQ 465  pea aphid
EFA12053      408 YVSTTTGVIKKISVLPRTQ--ETCVVEIWQTVqn----paTPVKSIQFLKATKSIYVATEHQVMKIPAE 470  red flour beetle

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