Conserved Protein Domain Family
Sema_4G

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cd11262: Sema_4G 
The Sema domain, a protein interacting module, of semaphorin 4G (Sema4G)
The Sema4G and Sema4C genes are expressed in the developing cerebellar cortex. Sema4G and Sema4C proteins specifically bind to Plexin B2 expressed in the cerebellar granule cells. Sema4G and Sema4C are involved in neural tube closure and cerebellar granule cell development through Plexin B2.Sema4G belongs to the class 4 transmembrane semaphorin family of proteins. Semaphorins are regulatory molecules involved in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module.
Statistics
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PSSM-Id: 200523
Aligned: 7 rows
Threshold Bit Score: 885.259
Created: 7-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
plexin bindingputative
Feature 1:plexin binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of semaphorin 4A to its receptor Plexin B1

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                    ###                 
CBN81657       5 TRFTGSSQNYSTLLLEEEvGLLYVGGRGALYALNTSDISTl-gNLTIDWDASPEQKKQCLNKGRDNQTECYNHVRFLQRY 83  European seabass
NP_001084878  47 RRFSSRVSNYSTLLLEDErGILYVGARGAIFSLNSSNISQr-yQKAIPWEVTAQKHEECMKKGKNNQTECFNHIRLLLRF 125 African clawed ...
Q9NTN9        47 RHFKGQAQNYSTLLLEEAsARLLVGARGALFSLSANDIGDg-aHKEIHWEASPEMQSKCHQKGKNNQTECFNHVRFLQRL 125 human
XP_003218524  17 RHFSSNAQNYTTLLLEDEkGILYVGARGAIFSLNSTNIADg-sHHIIDWKVSPERRAECLKKGKNNKTECYNHVRLLQRL 95  green anole
XP_003199679  47 NHFQGAALNYSSLLLEDGpGVLYVGAREAIYKLDTANISDtnnSLTLEWAASADQKRQCLSKGKNNQTECYNHVRFLDRY 126 zebrafish
CAP09407       6 RRFRGLTLNYSLLLLEEDaDLLYVGARGALFALQASDVSSs-lAQTIDWEASDDQMQQCWNKGKDNQTECFNHIRFLQRF 84  zebrafish
CAF98678       9 RRFRSPAVNYSTVLLEAEsQRLYVGARGAVFALNASDISAs-sALTIEWEASPEQKHQCLLKGKDNKTECFNHIRFLQRF 87  spotted green p...
Feature 1                                               #                    # ###              #
CBN81657      84 NETHLYVCGTNAFRPLCAYIDAERFSfssgFEEGRDRCPYDPAKGYTGLLVDGEMFTASQYEFRSSPDVRRNFpfPTLRT 163 European seabass
NP_001084878 126 NETHLYACGTYAFSPLCTYIDSRTFVlsseTEEGKEKCPYDPAKGYISILVDGGLYTASRYEFRNLPDIRRNLfqRSLKT 205 African clawed ...
Q9NTN9       126 NSTHLYACGTHAFQPLCAAIDAEAFTlptsFEEGKEKCPYDPARGFTGLIIDGGLYTATRYEFRSIPDIRRSRhpHSLRT 205 human
XP_003218524  96 NATHLYACGTFAFHPLCTYIDTNKFTlpthFEEGKEKCPYDPAHGYTGLIVDGSLYTATRYEFRSLPDIRRNRqqRILKT 175 green anole
XP_003199679 127 NDTHLYTCGTHAFRPRCAYIDVARFTfv-rFEEGKEKCPYDPTKGYTGFIIDGEMYSASQYEFRNIADIRRNFpfPNLRI 205 zebrafish
CAP09407      85 NSTHLYTCGTHAFSPLCAYIDGREFKissvFEEGREKCPYDPSKGYTGLLIDQQMYTASQYEFRSFPDIRRNSpnPILKT 164 zebrafish
CAF98678      88 NSTHLYTCGTHAFRPLCAYIREEDFVmssqPEEGRDKCPYGPTTGHTGLIVDQQIYTASQYEFRSFPDIRRNSpsPTLRT 167 spotted green p...
Feature 1          # #    #                                                   #                  
CBN81657     164 EEAPTRWLLEADFVGSVLLK--------------------ESINSSIGDDDKIYFFFTERSQEQ-----IAYPSQTKVSR 218 European seabass
NP_001084878 206 EESNLHWLNDAEFVSAALVP--------------------ESMNVEVGDDDKIYYFFNEKVVEE-----SSSFLGSKTAS 260 African clawed ...
Q9NTN9       206 EETPMHWLNDAEFVFSVLVR--------------------ESKASAVGDDDKVYYFFTERATEEgsgsfTQSRSSHRVAR 265 human
XP_003218524 176 EESPLHWLNDADFVASVLVR--------------------ESMGSYLGDDDKIYYFFTERAGEEsa-siFDKTQVPRVAR 234 green anole
XP_003199679 206 DDSPTRWLLESDFVGSALLR--------------------ESINSSIGDDDKLYFFFTERNTEP-----TAYSIQTKVAR 260 zebrafish
CAP09407     165 EEAPTQWLQDIIVVFVQMIAplsaflslseadfvgsalvrESLSSSAGDDDKIYFFFTEKSQEL-----SPYFSHSRVAR 239 zebrafish
CAF98678     168 EDAPTRWLNEADFVGSSLVR--------------------ESVDSSTGDDDKLYFFFTERSQER-----TTTYSQGRVAA 222 spotted green p...
Feature 1                   ##### #                                                              
CBN81657     219 VARVCKNDWGGQRTLQRKWTTFLKARMVCSVPeYELHLNILRSVFVLqgrdaQSSIFYGVFGLEW--KNIKASAICQYAF 296 European seabass
NP_001084878 261 IARVCKSDLGGKKILQRKWTSFLKARLVCYMPfYEVLQSAYTLELGTw----DTTIFYGAFVSQW--KNMEASAICRYSI 334 African clawed ...
Q9NTN9       266 VARVCKGDLGGKKILQKKWTSFLKARLICHIPlYETLRGVCSLDAETs----SRTHFYAAFTLSTqwKTLEASAICRYDL 341 human
XP_003218524 235 VARVCKNDIGGKKILQRKWTSFMKARLACYIPyYEILKDVYSLNNGDw----RSTVFYAAFSLSAqwRSMEVSAICRYNI 310 green anole
XP_003199679 261 VARVCKGDIGGQRTLQRKWTSFLKARLVCAIPdYELQFNVLRSVFVVegsnvHDSVFYGIFGLEW--RNVKMSAVCRYSL 338 zebrafish
CAP09407     240 VARVCKRDRGGLLTLQKKWTSFLKARLVCSLPdYEFHFNVLRSVFFLegsssQDSAFYGIFGLEW--KNVKASAICQYSV 317 zebrafish
CAF98678     223 VARVCKGDRGGRLTLQKRWTSFLKARLLCYLHeYDFHFNMLRSVFVLhgqtpQDTLFYGIFGLEW--KNVKASAVCRYSL 300 spotted green p...
Feature 1                          ##                                  #   #  #                  
CBN81657     297 SDVQKAFEGPYMEVQ---DSKWREYTGKVPEPRPGSCITdlhrsqginssrDLPDNVLTFARRHPLMASQVHPIgvRPLM 373 European seabass
NP_001084878 335 SDIQKVFEGPYMEYQy-sSRKWSRYEGEVPSPRPGSCITnefrsngfntsqDLPNNVLDFVRLHPLMCEKVRPIeeQPLL 413 African clawed ...
Q9NTN9       342 AEIQAVFAGPYMEYQd-gSRRWGRYEGGVPEPRPGSCITdslrsqgynssqDLPSLVLDFVKLHPLMARPVVPTrgRPLL 420 human
XP_003218524 311 SEVRTAFQGTYMEYQd-sSRKWSQYNGEVPAPRPGACINnrarkagyntsqDLPNSVLDFIKLHPLMYEEVKPVdgAPLL 389 green anole
XP_003199679 339 KDIQTAFNGPFMELQ---DSKWREYTGKVPDPRPGSCITdehrgklinssrDLPDNTLNFVRRHPLMSTQIQPVegRPLL 415 zebrafish
CAP09407     318 SDIQWAFDGPYMESKedsNSKWTQYTGKVPEPRPGSCITdqhrakginssiNLPDDVLHFVRRHPLMYRQILPQgqRPLL 397 zebrafish
CAF98678     301 SAVQEAFEGPYMEMQg-sRSEWKDYAGKIPEPRPGTCITdalrarglntstALPDDVLNFVRRHPLMAQQVLPSyrQPVL 379 spotted green p...
Feature 1                                                                                        
CBN81657     374 FKRSVNYVKIAVHKEPALDGnIYTILFLGTDDGWLHRAVdIDGEMHIIEELQLFDKPQPIESMVISSALRSVYVGSRSGV 453 European seabass
NP_001084878 414 MKRNIIYTRIAVDRVKALDNvYYDVLFLGTDDGWLHKAVvIGSAVHIIEEMQVYKFPQPIEKLVISKKQNTLYIGAQSGV 493 African clawed ...
Q9NTN9       421 LKRNIRYTHLTGTPVTTPAGpTYDLLFLGTADGWIHKAVvLGSGMHIIEETQVFRESQSVENLVISLLQHSLYVGAPSGV 500 human
XP_003218524 390 VKKNVIYTQVAVDRVRALDGkVYDMLFLGTGNGRIHKAVvLGSKVHIIEDIQVSRVPQPVETLIISKKQRSLYIGTRSGV 469 green anole
XP_003199679 416 LQKAADYTKIIVQQVEGLDGrTYDMLFIGTDEGWLQRAVkIIDRVHIIEELQLFQEKQPIINMVISQKQNSIYVSGASGL 495 zebrafish
CAP09407     398 FRRNVDYTKIAVHTVTGLDGqIYHILFIGTDEGWLQRAVkVEDHLHIIEELQLFEEPQPVDSIVISKKQMSVYVGSPTSV 477 zebrafish
CAF98678     380 FSRTTHYTHMAVQTTRGLDGrVYHVLYVATDERVPDLPVrRGSAPPLQLPEVRLLLRLHLCQGPPLCLEPNAVRGDNVAR 459 spotted green p...
Feature 1              
CBN81657     454 VQVPMS 459 European seabass
NP_001084878 494 LQIPLF 499 African clawed frog
Q9NTN9       501 IQLPLS 506 human
XP_003218524 470 LQLPLS 475 green anole
XP_003199679 496 VQVPLS 501 zebrafish
CAP09407     478 VQLPLS 483 zebrafish
CAF98678     460 EQVSVY 465 spotted green pufferfish

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