Conserved Protein Domain Family
Sema_4B

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cd11257: Sema_4B 
The Sema domain, a protein interacting module, of semaphorin 4B (Sema4B)
Sema4B, expressed in T and B cells, is an immune semaphorin. It functions as a negative regulatory of basophils through T cell-basophil contacts and it significantly inhibits IL-4 and IL-6 production from basophils in response to various stimuli, including IL-3 and papain. In addition, T cell-derived Sema4B suppresses basophil-mediated Th2 skewing and humoral memory responses. Sema4B may be also involved in lung cancer cell mobility by inducing the degradation of CLCP1 (CUB, LCCL-homology, coagulation factor V/VIII homology domains protein). Sema4B is characterized by a PDZ-binding motif at the carboxy-terminus, which mediates interaction with the post-synaptic density protein PSD-95/SAP90, which is thought to play a central role during synaptogenesis and in the structure and function of post-synaptic specializations of excitatory synapses. Sema4B belongs to class 4 transmembrane semaphorin family proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module.
Statistics
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PSSM-Id: 200518
Aligned: 4 rows
Threshold Bit Score: 921.566
Created: 7-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
plexin bindingputative
Feature 1:plexin binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of semaphorin 4A to its receptor Plexin B1

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                     ###                
NP_001087062  41 TFEADGATYYTTLLLSKDGNMLYVGARETLFSLNStdfm-steyHSKITWQADEEKKKECAFKGKDPQRDCQNYIKILLQ 119 African clawed ...
XP_689642     24 GFSVNGVYNYSALLLSPDENKIYVGARENIFSLSLdnis-vthlQKTLTWSTPETKRGECIFKGKDPQTDCFNYIKILLR 102 zebrafish
Q9NPR2        56 RFEAEHISNYTALLLSRDGRTLYVGAREALFALSSnlsflpggeYQELLWGADAEKKQQCSFKGKDPQRDCQNYIKILLP 135 human
NP_001121824  47 RFSPSGVFNYTSLLLSKEDNMLYVGARETLFALNIsdis-rtqmQRNLTWSTPQRKRDECSFKGKDLKTDCFNYIKILLR 125 zebrafish
Feature 1                                                         #                    # ## #    
NP_001087062 120 LNSTHLYTCGTFAFSPTCTYIkisdf---sleknASGHPVLEDGKGRCPFDPEYNSTAIMVDGEMYAGTVNNFQGNEPIV 196 African clawed ...
XP_689642    103 LNSTHLFVCGTYAFSPICTYIvntnissfsleadEKGEPIMEDGRGRCPFNPEYRSTAITVDGELYTATVSNFQGNEPSI 182 zebrafish
Q9NPR2       136 LSGSHLFTCGTAAFSPMCTYInmenf---tlardEKGNVLLEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAI 212 human
NP_001121824 126 VNSTHLYVCGTYAFSPICTYIvstntsnfslvrnEVGEIMTEDGRSRCPYNPEYKSTAIMADGELYAGTVSNFQGNDPII 205 zebrafish
Feature 1                  #  # #    #                                 #                       ##
NP_001087062 197 YKSHesriTLKTENALYWLQDPAFVGSAYIQESlpkgnlvGDDDKIYFFFSETGKEFDFFENTIVSRIARVCKGDLGGER 276 African clawed ...
XP_689642    183 YRSLgsgtPLKTENSLNWLQDPAFVGSAHITGSds----eRNDDQIYFFFSETGKEFDFFDNTIVSRIARVCKEDQGGER 258 zebrafish
Q9NPR2       213 SRSQsl-rPTKTESSLNWLQDPAFVASAYIPESlgs--lqGDDDKIYFFFSETGQEFEFFENTIVSRIARICKGDEGGER 289 human
NP_001121824 206 YKSLgqgtALKTENSLNWLQDPAFVGSAYIQESlpkgnavGDDDKIYFFFSEAGKEFDFFDNTIVSRIARVCKGDKGGER 285 zebrafish
Feature 1        ### #                                                                           
NP_001087062 277 VLQRRWTTFLKAQLICSCPGDGFPFNVLKDMFVLTPgeEHWKDTIFYGVFTSQWNKGgAGSSAVCAFSMDEVQNAFnGLF 356 African clawed ...
XP_689642    259 VLQKKWTTFLKAQLLCSLPDDGFPFNIIQDVYVLPA--KRKKNTLLYAVFASQWSKGlAGSSAVCVFSMDQVDRAFtGRY 336 zebrafish
Q9NPR2       290 VLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLSPspQDWRDTLFYGVFTSQWHRGtTEGSAVCVFTMKDVQRVFsGLY 369 human
NP_001121824 286 VLQKKWTTFLKAQLLCSLPDDGFPFNIIQDMFVLTPskEDWKKTMFYGVFTSQWYKGaSGSSAVCAFTMDQVEEAFnGRY 365 zebrafish
Feature 1              ##                                  #   #  #                              
NP_001087062 357 KEVNRETQQWYTYTNSVPEPRPGACITNsakhrkINSSLHMPDRVLNFVKDHFLMDSAIRSQPLLLQSQIRYKQISVQRV 436 African clawed ...
XP_689642    337 KEVNRETQQWYTYTQSVPEPRPGMCITNasrqlgIDSSLDMPDKVLNFVKDHFLMDRPVRSQPVLFTHTVHYTQIAVHHV 416 zebrafish
Q9NPR2       370 KEVNRETQQWYTVTHPVPTPRPGACITNsarerkINSSLQLPDRVLNFLKDHFLMDGQVRSRMLLLQPQARYQRVAVHRV 449 human
NP_001121824 366 REVNRETQQWYTYNHPVPEPRPGACITNtaraqgISSSLHMPDRVLNFVKDHFLMDNVIRSQPLLLKRNVRYTQLAVHRV 445 zebrafish
Feature 1                                                                              
NP_001087062 437 KGLKKTYDVLFLGTDDGRLHKAVSVNKMVHIIEEIKLFQDMQPVQELLLDPsKGLLYASSRSAVVQVPVS 506 African clawed frog
XP_689642    417 KGLHRAYDVMFIGTADGRLQKAVNVAGMMHIIEEIQLFSEQQPVQQIELDSaKGLLFVSSHSGIVQLPVA 486 zebrafish
Q9NPR2       450 PGLHHTYDVLFLGTGDGRLHKAVSVGPRVHIIEELQIFSSGQPVQNLLLDThRGLLYAASHSGVVQVPMA 519 human
NP_001121824 446 QALHKTYDVLFIGTDDGRIHKAINVKNKMYIIEELVIFPEPQSVQHIELDDeKGLLFVSSYSGLVEIPLA 515 zebrafish

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