Conserved Protein Domain Family
Sema_4A

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cd11256: Sema_4A 
The Sema domain, a protein interacting module, of semaphorin 4A (Sema4A)
Sema4A is expressed in immune cells and is thus termed an "immune semaphorin". It plays critical roles in T cell-DC interactions in the immune response. It has been reported to enhance activation and differentiation of T cells in vitro and generation of antigen-specific T cells in vivo. The function of Sema4A in the immune response implicates its role in infectious and noninfectious diseases. Sema4A exerts its function through three receptors, namely Plexin B, Plexin D1, and Tim-2. Sema4A belongs to the class 4 transmembrane semaphorin family of proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. TThe Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module.
Statistics
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PSSM-Id: 200517
Aligned: 3 rows
Threshold Bit Score: 854.59
Created: 7-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
plexin bindingputative
Feature 1:plexin binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of semaphorin 4A to its receptor Plexin B1

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                    ###                 
Q9H3S1        55 FFHQKGLQDFDTLLLSGDgnTLYVGAREAILALDIqdPGVPRLKNMIPWPAsdRKKSECAFKKKSNETQCFNFIRVLVSY 134 human
NP_001107311  42 RFRLENVHNYDQLVLSPDetTLYVGARDNILSLGIr-PGPIRLLHQAPWPAndSSITSCVNKAKSNKTECFNFIRILAPV 120 western clawed ...
XP_002187711  39 HFSQDNISHYDIFLLDESeeELYVGARDWVLALAVgtPGSIRAKASIMWGAtdEKTSECAFKKKSQETECFNFIRVLVAL 118 zebra finch
Feature 1                                                     #                    # ## #        
Q9H3S1       135 NVTHLYTCGTFAFSPACTFIELqdsyllp--isedkvMEGKGQSPFDPAHKHTAVLVDGMLYSGTMNNFLGSEPILMRTL 212 human
NP_001107311 121 NGSHLYTCGTYAFNPTCTYIELdhfsmpknpngtiitMDGRGQSPFDPQHNYTSITIDGELYTGTMNNFRGNEPVIFRNL 200 western clawed ...
XP_002187711 119 NQTHLYVCGTYAFSPACTYIHLenftlvp-sgrgqpfLDGKGQCPFDPKHTYTALLVDGELYAGTMNNFQGNEPIISRSL 197 zebra finch
Feature 1              #  # #    #                           #                       ##### #     
Q9H3S1       213 GsqpvLKTDNFLRWLHHDASFVAAIPSt-----QVVYFFFEETASEFDFFERLHTSRVARVCKNDVGGEKLLQKKWTTFL 287 human
NP_001107311 201 GtkvsLRTEGSHGWLNADAVFVGSFNPqgsspdSKVYFFFDETTREYDFFEKMTVARVARVCKNDVGGEKVLQKRWTTFL 280 western clawed ...
XP_002187711 198 GtrtlLKTDAFLRWLSADAAFVASFSIpe---dDKVYFFFEETADEFDFFEKLLVPRVARVCKSDVGGEKLLQKKWTTFL 274 zebra finch
Feature 1                                                                                 ##     
Q9H3S1       288 KAQLLCTQPGQLPFNVIRHAVLLpadsptAPHIYAVFTSQWQVGGTRSSAVCAFSLLDIERVFKGKYKELNKETSRWTTY 367 human
NP_001107311 281 KAQLTCSLQNHFPFNILHHVALQnqpdpnNSVFFGVFRTQWQLGGRRSSAVCLYKLNDIEKVFNGAFKEQNKESSKWNRY 360 western clawed ...
XP_002187711 275 KAQLVCSQTGHFPFNVIHHTFALlrh-dgRADFYAVFTSQWQAGRAGSAAVCAYRQEDLEKVFEGKYKELNKESSRWTVY 353 zebra finch
Feature 1                          #   #  #                                                      
Q9H3S1       368 RGPETNPRPGSCSVGpsSDKALTFMKDHFLMDEQVVG---TPLLVKSgVEYTRLAVEtaqgldghsHLVMYLGTTTGSLH 444 human
NP_001107311 361 MGVVSDPRPGSCSGGkfSDTDLNFMKEHFLMDEVVLPgagRPVLVKQnVQYTRIALDsvqsvsglnYTVMFLGTDKGFLH 440 western clawed ...
XP_002187711 354 SGPDMSPRPGSCSMGasSDKALSFMKDHFLMDGKVSPmrgQPLLVKSdVTYTRITVHetrg-sshlESIQLFARPEPVKN 432 zebra finch
Feature 1                                                            
Q9H3S1       445 KAVvs-gDSSAHLVEEIQLFPDPEPVRNLQLAPtqgaVFVGFsGGVWRVPRA 495 human
NP_001107311 441 KAVlmgnGSESHIIEEIELLTPEEPVENILLAAnegvLYIGYsAGVLRVPLA 492 western clawed frog
XP_002187711 433 LLLap-gKGILYVGYSRGVLQVPLANCSLHRSCae-cVLARDpYCAWHSPEG 482 zebra finch

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