Conserved Protein Domain Family
Sema_3B

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cd11250: Sema_3B 
The Sema domain, a protein interacting module, of semaphorin 3B (Sema3B)
Sema3B is coexpressed with semaphorin 3F and both proteins are candidate tumor suppressors. Both Sema3B and Sema3F show high levels of expression in normal tissues and low-grade tumors but are down-regulated in highly metastatic tumors in the lung, melanoma cells, bladder carcinoma cells and prostate carcinoma. They are upregulated by estrogen and inhibit cell motility and invasiveness through decreased FAK phosphorylation and inhibition of MMP-2 and MMP-9 expression. Two receptor families, the neuropilins (NP) and plexins, have been implicated in mediating the actions of semaphorins 3B and 3F. Sema3B is a member of the class 3 semaphorin family of proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module.
Statistics
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PSSM-Id: 200511
Aligned: 4 rows
Threshold Bit Score: 1011.37
Created: 7-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:homodimer interface [polypeptide binding site]
Evidence:
  • Comment:based on the homodimer structure of Semaphorin 3A
  • Comment:Semaphorin/plexin signaling is dependent on the formation of a 2:2 heterotetramer that is composed of two plexin molecules bound to a semaphorin homodimer. Monomeric semaphorin binds plexin but does not trigger signaling.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
XP_003217662  89 TYELERSCCYDSLLLDEERGRLFVGGKNYLASLSLDNISKQDKKIYWPAPVEWREECNWAGKDInaECMNFVKILHLYNR 168 green anole
NP_001121818  46 RFDLERSCSFGALLLDEERGRLFVGARNFLLSLSLDNISKQEQKIYWPAPVDWREECNWAGKDIntDCVNYVKVLHHYNR 125 zebrafish
NP_001120908  43 TFTLERSCCYDALFLDEERGRLFVGGKNYLMSLSLDNISKQELAIHWPAPVEWREECNWAGKDInvDCMNYVKILQPYNR 122 western clawed ...
Q13214        46 TFSLERTCCYQALLVDEERGRLFVGAENHVASLNLDNISKRAKKLAWPAPVEWREECNWAGKDIgtECMNFVKLLHAYNR 125 human
Feature 1                                                                                        
XP_003217662 169 THLYACGTGAFHPICGFVEVGqrvedavfkldfkslEDGKGKSPYDPRHMAASVFAGEELYSGVATDLMGRDFTIFRSLg 248 green anole
NP_001121818 126 THLYACGTGAFHPTCAYVEVGqkmedhvfridpslvEDGKGKSPYDPRHTSASVLIGDELYAGVATDLMGRDFTIFRSMg 205 zebrafish
NP_001120908 123 THLFTCGTGAFHPTCGFVHVGqrtddtvfkmdlrrmEDGKGRCPYDPKHIAAAVLVGDELYSGVATDLMGRDFTIFRSLg 202 western clawed ...
Q13214       126 THLLACGTGAFHPTCAFVEVGhraeepvlrldpgriEDGKGKSPYDPRHRAASVLVGEELYSGVAADLMGRDFTIFRSLg 205 human
Feature 1                                                      ##  #  ###                        
XP_003217662 249 srPSIRTEQHDSRWLNEPKFVDVFWIPESENPDDDKIFFFFRETAVEGSqGLGKQTFARIGQICRNDMGGQRSLVNKWTT 328 green anole
NP_001121818 206 qkPSIRTEQHDSRWLNEPKFIAAFGVPESDNPDDDKVFFFFRETAVEAQ-GFGKVTYSRIGQLCRNDMGGQRSLVNKWTT 284 zebrafish
NP_001120908 203 rrPPLRTEQHDSRWLNEPKFVKVFWIPESENPDDDKIYFFFKETPVEGA-GGVKQSYARIGQICRNDLGGQRSLVNKWTT 281 western clawed ...
Q13214       206 qrPSLRTEPHDSRWLNEPKFVKVFWIPESENPDDDKIYFFFRETAVEAApALGRLSVSRVGQICRNDVGGQRSLVNKWTT 285 human
Feature 1                 #  ##  # #   #                      ########                         ##
XP_003217662 329 FLKARLVCAVQGSDg-SDTYFDQLRDVFLLpTREKRNPLLYAVFTTSSTVFKGSAVCVYHMNDIRRAFLGPFAHKEGpNY 407 green anole
NP_001121818 285 FLKARLVCSVPGNDg-TETHFDELRDVFLLqTRDKKNPLIYTVFTTSSSVFQGSAVCLYTMNDIRRAFLGPFAHKEGpNY 363 zebrafish
NP_001120908 282 FLKARLVCSVPGNEigGDTHFDELRDVFLLqTRDRRNPLIYALFSTSSSVFRGSAICVYTMNDVRRAFLGPFAHKEGpNY 361 western clawed ...
Q13214       286 FLKARLVCSVPGVE--GDTHFDQLQDVFLLsSRDHRTPLLYAVFSTSSSIFQGSAVCVYSMNDVRRAFLGPFAHKEGpMH 363 human
Feature 1        ##                                           #              #                   
XP_003217662 408 QWVSFQGRVPYPRPGMCPSKTFGtFSSTKDFPDDVIQFARNHPLMYNPVLPHGQKPVFLQTNVGYSFTRIAVDRVAAADG 487 green anole
NP_001121818 364 QWIPFQGKVPYPRPGMCPSKTFGsFESTKGFPDNVIQFARHHPLMFNPVTPLGGRPLFLRTGIPYTFTQITVDRVNAADG 443 zebrafish
NP_001120908 362 QWVSYQGKVPYPRPGMCPSKTFGsFESTKSFPDDVLQFARNHPLMFNPVVPGSGRPVFLRSHGDLSFTQLAVDRVAAADG 441 western clawed ...
Q13214       364 QWVSYQGRVPYPRPGMCPSKTFGtFSSTKDFPDDVIQFARNHPLMYNSVLPTGGRPLFLQVGANYTFTQIAADRVAAADG 443 human
Feature 1                                                                                 
XP_003217662 488 HYDVLFIGTDVGTVLKVVSVPKEtwqnmEELLLEELQVFkdpTPVTSIQISSKRQQLYVGSrTAISQLPLHRC 560 green anole
NP_001121818 444 HYDVMFIGTDVGSVLKVISVPKGsw-snTELLLEELHVFkdsSSIISMQISSKRQQLYVGSdTGVVQVPLHRC 515 zebrafish
NP_001120908 442 EYDVMFIGTDVGSVLKVISVPKQswhhvEQVVLEELQVFknaSPITTMQISSKRQQIYVGSaSGISQLPLHRC 514 western clawed frog
Q13214       444 HYDVLFIGTDVGTVLKVISVPKGsrpsaEGLLLEELHVFedsAAVTSMQISSKRHQLYVASrSAVAQIALHRC 516 human

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