1SHY,2UZX


Conserved Protein Domain Family
Sema_MET_like

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cd11248: Sema_MET_like 
Click on image for an interactive view with Cn3D
The Sema domain, a protein interacting module, of MET and RON receptor tyrosine kinases
This family includes MET and RON receptor tyrosine kinases. MET is encoded by the c-met protooncogene. MET is the receptor for hepatocyte growth factor/scatter factor (HGF/SF). HGF/SF and MET regulates multiple cellular events and are essential for the development of several tissues and organs, including the placenta, liver, and several groups of skeletal muscles. RON receptor tyrosine kinase is a Macrophage-stimulating protein (MSP) receptor. Upon binding of MSP, RON is activated via autophosphorylation within its kinase catalytic domain, resulting in a variety of effects including proliferation, tubular morphogenesis, angiogenesis, cellular motility and invasiveness. By interacting with downstream signaling molecules, it regulates macrophage migration, phagocytosis, and nitric oxide production. MET and RON receptors have been implicated in cancer development and migration. They are composed of alpha-beta heterodimers. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a Sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic tyrosine kinase domain. The Sema domain is necessary for receptor dimerization and activation.
Statistics
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PSSM-Id: 200509
Aligned: 8 rows
Threshold Bit Score: 695.32
Created: 8-Dec-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative HGF
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:putative HGF ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of human MET sema domain to HGF-beta chain
  • Comment:MET serves as the receptor for hepatocyte growth factor (HGF), while RON is the receptor for HGF-like Macrophage stimulating protein (MSP).
  • Structure:1SHY; Human MET sema domain binds HGF-beta chain, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
1SHY_B         19 LPNFTAETPIQNVILHEHh----IFLGATNYIYVLNEeDLQKVAEYKTGPVlehpdCFPCQDCsskanlsggvWKDNINM 94   human
Q62190         48 VPSFSAGGRVQATAAYEDstnsaVFVATRNHLHVLGP-DLQFIENLTTGPIgn-pgCQTCASCgpgp---hgpPKDTDTL 122  house mouse
NP_001007125   43 LPYFVSDTPIQKLLEINGt----VYVGAVNRLYALSK-DLKKKHEYKTGPVhegpdCKTPTDQcsgce-nkprNINNTNM 116  zebrafish
AAR16325       43 LPTFTADSPIQNMVTLDGi----IYVGAVNRIYALAP-DLTKLSEYHTGPLl---aNQTCGQKfants-fgggRKDNVNV 113  spotted green...
CBN80587       41 LPHFKTDKSIQNIAVNWDseqpeVYVACQNVIEAIND-AMEKIWEVKTGPVgs-pdCETCQVCdiea--dpgdPVDTDNE 116  European seabass
XP_001921292   11 VYFFQTTNAIQNIVFNEYfd--eVYVASQNVVEALDK-NLTKLWELKTGPVgs-pdCQTCNCDiene---pgtSLDTDNQ 83   zebrafish
CAF96889        8 MPFFQARGPIQNIVNNSFyq--eVYVASQNVIEAVDQ-SLEKVWELRTGPVgs-peCKICDLCsidk--dpnfLEDTNNQ 81   spotted green...
2UZX_B         22 LPNFTAETPIQNVILHEHh----IFLGATNYIYVLNEeDLQKVAEYKTGPVlehpdCFPCQDCsskanlsggvWKDNINM 97   human
Feature 1              ###                                           #                       ##   
1SHY_B         95 ALVVDTYYd--DQLISCGSVNRGTCQRHVFphnh-tadiQSEVHCIFSPQIEe-pSQCPDCVVSALGAKVLSSVKDRfIN 170  human
Q62190        123 VLVMEPGL---PALVSCGSTLQGRCFLHELeprg-kalhLAAPACLFSANNNk-pEACTDCVASPLGTRVTVVEQGHaSY 197  house mouse
NP_001007125  117 ALLMETFYd--LELFSCGSVGNGVCSRHVLedg----plGAEVTCMYTKKNEgssHGCPDCLAGPAGTQILNIMSGRvVR 190  zebrafish
AAR16325      114 ALVLENIYd--KGLFSCGSADNGVCRRHVLeddvsqksvDEQVYCFTDLKQDkgqPRDSDVVVSPSGSQVLNVESNM-IM 190  spotted green...
CBN80587      117 VLLLDPAGslfPYLYICGSTQHGICYYIDIsl------qQPKPQCLYQKKQNs-pTYCPDCLASPLGTKVTIVEHAAtSL 189  European seabass
XP_001921292   84 VLVLEPQQh-lDFLYICGSTQYGVCNMLELdkg----niASSPECLFNKKANs-pSDCPDCVASPLGTKVTVVDEGYsTY 157  zebrafish
CAF96889       82 VLLLDTMF---MYLYTCGSSQHGVCYFHQLnwt---gepPSLSKCLYRKESNs-aAYCPDCVASSLGTKVTMVEEGQtVY 154  spotted green...
2UZX_B         98 ALVVDTYYd--DQLISCGSVNRGTCQRHVFphnh-tadiQSEVHCIFSPQIEe-pSQCPDCVVSALGAKVLSSVKDRfIN 173  human
Feature 1                                    # #        ##                                        
1SHY_B        171 FFVGNTINssy----fpdHPLHSISVRRLKetkDGFMFLTdqSYIDVLPEFRDSYPIKYVHAFESNNFIYFLTVQRETl- 245  human
Q62190        198 FYVASSLDpel----aasFSPRSVSIRRLKs--DTSGFQPgfPSLSVLPKYLASYLIKYVYSFHSGDFVYFLTVQPISvt 271  house mouse
NP_001007125  191 FFVANSEPles----ngpRLHHTISIRKMRetqDGFEFFSeqSYMDLAPSLRGNYPLHYVYSFQSGPYVYFLTVQREGg- 265  zebrafish
AAR16325      191 FFVGNSEIpglgngigsaTHPHTMSLRKMKtsqNGFTFLSsqSYMDLIPPLRGNYYLRYVYSFHSGPFTYFLTVQQVSk- 269  spotted green...
CBN80587      190 FFVASSVNdrv----tqrYPRRSISVLRPLa--TEDGFHMvmNGLTVLPSLRDSYKIDYIYSFSTKDHVYFLSLQRENps 263  European seabass
XP_001921292  158 FFTAATVNsti----agsFGKHSLSIRRLLn--TENGFHDv-KNLTVLPKFQDVFTIDYIYTFSTTEYVYFLSVQWESlm 230  zebrafish
CAF96889      155 FFVASTVNdsv----sqrYGRKSLSVRRPLa--TEDGFYSdvRGLTVLPSLRNAYHIEYVYSFFTQEFVFFLSVQRESpd 228  spotted green...
2UZX_B        174 FFVGNTINssy----fpdHPLHSISVRRLKetkDGFMFLTdqSYIDVLPEFRDSYPIKYVHAFESNNFIYFLTVQRETl- 248  human
Feature 1                          #                                                              
1SHY_B        246 -DAQTFHTRIIRFCSINSGLHSYMEMPLECILTELVPRGStk-----keVFNILQAAYVSKPGAQLARQiga--slnDDI 317  human
Q62190        272 sPPSALHTRLVRLNAVEPEIGDYRELVLDCHFAPKRRRRGape---gtqPYPVLQAAHSAPVDAKLAVElsi--segQEV 346  house mouse
NP_001007125  266 -NSKAFHTRIVRMCSSDSEILRYVEMPFECIYSERRRKKRsa-----qvVFNVLQAAHVAKVGYDFQQEmgl--kegEDV 337  zebrafish
AAR16325      270 -DSQAYHTRIVRMCSFDHDIRRYVEMPLECISTDKRRRRSted----vkVFNILQAANVTKVGSDVELQrqlkveedDDV 344  spotted green...
CBN80587      264 kPKSAFQTRLGRLPISIPEVWMYREVVLECRYDPKRRRRRrefl--rniVYNGLQAAHFGRAGKDLADElrv--aetEDI 339  European seabass
XP_001921292  231 kPNAKLQTHLGRLPIKDSELWMYREIILECRFEPKRRRRSfr-----dvVYNSVQAAHFSTAGKELADDlgv--ridSPI 303  zebrafish
CAF96889      229 qESSPFQTRLGRLPRNEWEMKRYREVILECRFEPKRRRRAvgsepykdvVYNVVQAAHFGKAGRELAKElga--eeeDDI 306  spotted green...
2UZX_B        249 -DAQTFHTRIIRFCSINSGLHSYMEMPLECILTEKRKKRStk-----keVFNILQAAYVSKPGAQLARQiga--slnDDI 320  human
Feature 1                                                                                         
1SHY_B        318 LFGVFAQSKPdSAEPMDRSAMCAFPIKYVNDFFNKIVNKNNvrclqhfygpnhehcfn-----rtllrnssgcearrdeY 392  human
Q62190        347 LFGVFVTVKDgGSGMGPNSVVCAFPIYHLNILIEEGVEYCChssnsssllsrgldffqtpsfcpnppggeasgpssrchY 426  house mouse
NP_001007125  338 LFAAFARSKPdSPEPTASSAVCLISITDINEFFKVFIQKGYtrklhhfpgseektfn------qtfvgdsfscgkhergY 411  zebrafish
AAR16325      345 LFAAFARGKPnSPEPTPNSAICIMSLKHINDMFKMYMKKCNtvdlyhftgsdtkscynvs-ssndcdphegihegkegkY 423  spotted green...
CBN80587      340 LYGVFAEVNE-HGQPKKNSALCAFPLSKVNQAIEEGVEACCksgseqlsrglchfqpc-----escphessegndtcsaR 413  European seabass
XP_001921292  304 LYGVFAVTDQ-KGNPMRQSALCAFPLDYVNSAIEKGVDACCsslteqisrglchfqpce--mcphltnennsdsltcktT 380  zebrafish
CAF96889      307 LYGVFAVTDD-SGVAEHDSALCAFPMDIVNTAIADGVDDCCqsgpeqlsrglchfqpc-----escphesmennatckdQ 380  spotted green...
2UZX_B        321 LFAVFAQSKPdSAEPMDRSAMCAFPIKYVNDFFNKIVNKNNvrclqhfygpnhehcfn-----rtllrnssgcearrdeY 395  human
Feature 1                                                                                         
1SHY_B        393 RTEFTTALQ-RVDLFMGQFSEVLLTSISTFIkGDLTIANLGTSEGRFMQVVVSRSgp-stPHVNFLLDs--HPVSPEVIV 468  human
Q62190        427 FPLMVHASFtRVDLFNGLLGSVKVTALHVTRlGNVTVAHMGTVDGRVLQVEIARSlnyllYVSNFSLGssgQPVHRDVSR 506  house mouse
NP_001007125  412 RLEVTSTNP-RRDYFHGRFRNVLLTSIAVVPiQNHTVVSLGTAEGRVIQVVVSRFgk-tePHVDFRLDm--LPVSSEMAL 487  zebrafish
AAR16325      424 RLQVTQFVQ-RLEYWHKELTNTLVTSINVVPvHGRAVAYLGTADGRHIQVVFSRSl---rPHVNIRLDs--RPVSAGVVL 497  spotted green...
CBN80587      414 PTLVSVPFH-RLDLFNRQMRDVLFTAVLVTTiGNHTLGHFGTSDGRILQVILSQYrp--iVFANYSLEg--AEVSRTAAV 488  European seabass
XP_001921292  381 PTMVSKPYY-RVDFFNGQMSNVLFTSILVTTiETKTVAHIGTDHGRLLQIILSRSip--vVFANYSLVedaQKVSRIAAI 457  zebrafish
CAF96889      381 PTMVSKPYY-RVDLFNRQMTDVLLTSLLVTTiENKTVAHIGTSTGRLLQLVLTRSsp--iIFANYSLVe-nQRVSSIAAV 456  spotted green...
2UZX_B        396 RTEFTTALQ-RVDLFMGQFSEVLLTSISTFIkGDLTIANLGTSEGRFMQVVVSRSgp-stPHVNFLLDs--HPVSPEVIV 471  human
Feature 1                                 
1SHY_B        469 EHtlnqnGYTLVITGkKITKIPLN 492  human
Q62190        507 LG-----NDLLFASGdQVFKVPIQ 525  house mouse
NP_001007125  488 LSpqhhnGSLLLITGdKVSKLPVI 511  zebrafish
AAR16325      498 PGqnlseGALLLATGnKITKVPLI 521  spotted green pufferfish
CBN80587      489 YSa----DSLLFVAGnKFSPKMAP 508  European seabass
XP_001921292  458 HSs---lESLLFVVGnKLINVSPR 478  zebrafish
CAF96889      457 YSs----EYLLFVVGdKHVIVSTI 476  spotted green pufferfish
2UZX_B        472 EHtlnqnGYTLVITGkKITKIPLN 495  human

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