3AL8


Conserved Protein Domain Family
Sema_plexin_A

?
cd11244: Sema_plexin_A 
Click on image for an interactive view with Cn3D
The Sema domain, a protein interacting module, of Plexin A
Plexins serve as receptors of semaphorins and may be the ancestor of semaphorins. Members of the Plexin A subfamily are receptors for Sema1s, Sema3s, and Sema6s, and they mediate diverse biological functions including axon guidance, cardiovascular development, and immune function. Guanylyl cyclase Gyc76C and Off-track kinase (OTK), a putative receptor tyrosine kinase, modulate Sema1a-Plexin A mediated axon repulsion. Sema3s do not interact directly with plexin A receptors, but instead bind Neuropilin-1 or Neuropilin-2 toactivate neuropilin-plexin A holoreceptor complexes. In contrast to Sema3s, Sema6s do not require neuropilins for plexin A binding. In the complex, plexin As serve as signal-transducing subunits. An increasing number of molecules that interact with the intracellular region of Plexin A have been identified; among them are IgCAMs (in axon guidance events) and Trem2-DAP12 (in immune responses). The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a ligand-recognition and -binding module.
Statistics
?
PSSM-Id: 200505
Aligned: 4 rows
Threshold Bit Score: 908.818
Created: 7-Apr-2011
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Semaphorin
Conserved site includes 24 residues -Click on image for an interactive view with Cn3D
Feature 1:Semaphorin binding site [polypeptide binding site]
Evidence:
  • Comment:Plexins function as receptors of semaphorins.
  • Structure:3AL8; mouse Plexin A2 binds to semaphorin 6A, contacts at 4A distance.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                 # ##                    
3AL8_B          8 YSTFHSEn-rDWTFNHLTVHRRTGAVYVGAINRVYKLTGNLTiqVAHKTGPEEDNKACYPPLIVqpcsevLTLTNNVNKL 86   house mouse
XP_002194409   33 KSPFRTFpvtDWSLTHLVVHNKTGEVYVGAVNRIYKLSNNLTllRTHVTGPVEDNEKCYPPPSVqscphgLVTTNNVNKL 112  zebra finch
NP_001091959   30 EVTGSFKv-kDTSLTHLTVHRKTGEVFVGAINRVYKLSANLTetRSHQTGPVEDNAKCYPPPSVractqkLESTDNVNKL 108  zebrafish
EAW83796       40 FVTFRGEp--AEGFNHLVVDERTGHIYLGAVNRIYKLSSDLKvlVTHETGPDEDNPKCYPPRIVqtcnepLTTTNNVNKM 117  human
Feature 1                                               #                                         
3AL8_B         87 LIIDysenRLLACGSLyqGVCKLLRLDDLFILVEPSHKKEHYLSSVnktgTMYGVIVrseg--------edgKLFIGTAV 158  house mouse
XP_002194409  113 LLVDysgnRLIACGSAsqGICQFLRLDDLFKLGEPHHRKEHYLSSVnesgTMSGVIIevln--------gqnKLFIGTPI 184  zebra finch
NP_001091959  109 LLVDyagnRLAACGSIwqGVCQFLRLEDLFKLGEPHHRKEHYLSGAkesdGMAGVVVgdddgdlkkkkkggsRLFIGAAI 188  zebrafish
EAW83796      118 LLIDykenRLIACGSLyqGICKLLRLEDLFKLGEPYHKKEHYLSGVnesgSVFGVIVsysn--------lddKLFIATAV 189  human
Feature 1            ###                         ###      ###                                     
3AL8_B        159 DGKQDYFPTLSSRKLPRDPESSAMLdyELHSDFVSSLIKIPSDTlalvshfDIFYIYGFASGGFVYFLTVQPetpdgmai 238  house mouse
XP_002194409  185 DGKSEYFPTLSSRKLMANEENAEMFgfVYQDEFVSSQLKIPSDTlskfptfDIYYIYSFSSEQFVYYLTLQLdtqltsp- 263  zebra finch
NP_001091959  189 DGKSEYFPTLSSRKLVADEESVNMFslVYQDEFVSSQIKIPSDTlsqypafDIYYVYGFSSRTYIYFLTLQLdtqltqv- 267  zebrafish
EAW83796      190 DGKPEYFPTISSRKLTKNSEADGMFayVFHDEFVASMIKIPSDTftiipdfDIYYVYGFSSGNFVYFLTLQPemvsppg- 268  human
Feature 1                                                                                         
3AL8_B        239 nsagdlfYTSRIVRLCKddPKFHSYVSLPFGCtragvEYRLLQAAYLAKPGEALAQAFnissdEDVLFAIFSKGQKqyhh 318  house mouse
XP_002194409  264 dstgeqfFTSKIVRLCVddPKFYSYVEFPIGCvqdgiEYRLIQDAYLTKPGKALARYLgiseqEDILFTIFSQGQKnrvk 343  zebra finch
NP_001091959  268 dvtgekfFTSKIVRMCSndTEFYSYVEFPLGCtkdgvEYRLVQAAYKHRPGKILAQALglsedEDVLFVIFSQGQKnran 347  zebrafish
EAW83796      269 sttkeqvYTSKLVRLCKedTAFNSYVEVPIGCersgvEYRLLQAAYLSKAGAVLGRTLgvhpdDDLLFTVFSKGQKrkmk 348  human
Feature 1                                              #  # #  #####         ## #                 
3AL8_B        319 ppdDSALCAFPIRAINLQIKErLQSCYHGEGNLELnwLLGKDVQCTKAPVPIddnFCGLDINQPLGGSTPVEGl-----T 393  house mouse
XP_002194409  344 ppkESVLCLFTLKKIKDKIKErIQSCYRGEGKLSLpwLLNKELGCINSPLQIddnFCGQDFNQPLGGTVTIEGtplfgtP 423  zebra finch
NP_001091959  348 pprETVLCLFTLHQINLAMRErIKSCYRGEGKLSLpwLLNKELPCINTPKQIgddFCGLVLNQPLGGLMVIEGi-----P 422  zebrafish
EAW83796      349 sldESALCIFILKQINDRIKErLQSCYRGEGTLDLawLKVKDIPCSSALLTIddnFCGLDMNAPLGVSDMVRGi-----P 423  human
Feature 1                                                                                         
3AL8_B        394 LYTTsrDRLTSVASYVYngYSVVFVGTKSGKLKKIRADgpp---hggVQYEMVSVFkdgSPILRDMAFSInqlYLYVMSe 470  house mouse
XP_002194409  424 LFVDkeDGMTSVAAYDYrgQTVVFAGTRSGKIKKILVDlpaerkhqaLQYENVVAHe-gSSILRDLVLSPdrqHIYAMTe 502  zebra finch
NP_001091959  423 LFDDrtDGMASVAAYTYgdHSVVFVGTRSGHLKKIRVNgvpppsenaLLYETVTVVe-gSPILRDMVFSPdyqYIYLLSd 501  zebrafish
EAW83796      424 VFTEdrDRMTSVIAYVYknHSLAFVGTKSGKLKKIRVDgpr---gnaLQYETVQVVd-pGPVLRDMAFSKdheQLYIMSe 499  human
Feature 1                  
3AL8_B        471 RQVTRVPVE 479  house mouse
XP_002194409  503 KQVTRVPVE 511  zebra finch
NP_001091959  502 KQVSRLPVE 510  zebrafish
EAW83796      500 RQLTRVPVE 508  human

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap