Conserved Protein Domain Family
Sema_5

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cd11241: Sema_5 
The Sema domain, a protein interacting module, of semaphorin 5 (Sema5)
Class 5 semaphorins are transmembrane glycoproteins characterized by unique thrombospondin specific repeats in the extracellular region of the protein. There are three subfamilies in class 5 semaphorins, namely 5A, 5B and 5C. Sema5A and Sema5B function as guidance cues for optic and corticofugal nerve development, respectively. Sema5A-induced cell migration requires Met signaling. Sema5C is an early development gene and may play a role in odor-guided behavior. Sema5A is also implicated in cancer. In a screening model for metastasis, the Drosophila Sema5A ortholog, Dsema-5C, has been found to be required in tumorigenicity and metastasis. Sema5A is highly expressed in human pancreatic cancer cells and is associated with tumor growth, invasion and metastasis. Semaphorins are regulatory molecules involved in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module.
Statistics
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PSSM-Id: 200502
Aligned: 4 rows
Threshold Bit Score: 760.168
Created: 7-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative plexinputative
Feature 1:putative plexin binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of semaphorins 6A and 4D to their receptor plexins A2 and B1, respectively

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                ####                     
EFZ11332       88 FYLEIPGTSSRHLLQA----VAFLGRDNLYRLTLtsltDLEHASWSAPEDKVNTCQNKG---QSVEDCRNYVKVLLSNGK 160  red fire ant
XP_003207727   60 FTYPGVHDFSQLALDAnrnqLIVGARNYLFRLSLhnvsLIQATAWGSDEDTRRSCQSKG---KTEEECQNYVRVLIVYGK 136  turkey
Q62217         50 FRAENAVDFSRLTFDPgqkeLVVGARNYLFRLELedlsLIQAVEWECDEATKKACYSKG---KSKEECQNYIRVLLVGGD 126  house mouse
XP_002110163   18 FEISYVSSYYSIVEDPthdqIILGAKNYIIALRKqslnLLQIVPYNSSLQQKRQCQFRPsssPNVNLCNNYVTFLAIVGR 97   Trichoplax ad...
Feature 1                                        ##   #                       # ##      #         
EFZ11332      161 SLFTCGTYAFSPWCAWREIENITsvtsemSGVAMCPYSPHANVTALLSrgpsGGLFAGAPTDFSGADPAIYRTLas-pnL 239  red fire ant
XP_003207727  137 KVFTCGTNAFSPVCSSRQVGNLSkiidriNGVARCPYDPRHNSTAVITs--rGELYAATVIDFSGRDPAIYRSLgnvppL 214  turkey
Q62217        127 RLFTCGTNAFTPVCTIRSLSNLTeihdqiSGMARCPYSPQHNSTALLTa--sGELYAATAMDFPGRDPAIYRSLgtlppL 204  house mouse
XP_002110163   98 NLYSCGSYSLAPNCTIRKLSNLHqilhthDGHGLVSFNPALPSINAISa--dGSLYGGTVYDIDRKSYTIQRRFggkvsL 175  Trichoplax ad...
Feature 1         #  ## #    #                     #                       ##### #                
EFZ11332      240 RTRQYDSKWLNDPQFVGSFETEDHVYFLFRESAVEYiNCGKKIYSRIARVCKNDRGGQIMMKDVWTTFSKARLNCSLPGE 319  red fire ant
XP_003207727  215 RTAQYNSKWLNEPNFIAAYDIGLFTYFFFRENAVEH-DCGKTVYSRVARVCKNDIGGRFLLEDTWTTFMKARLNCSRAGE 293  turkey
Q62217        205 RTAQYNSKWLNEPNFVSSYDIGNFTYFFFRENAVEH-DCGKTVFSRPARVCKNDIGGRFLLEDTWTTFMKARLNCSRPGE 283  house mouse
XP_002110163  176 NTDGSSPTWLNAPRFAGFHESLNHMFVWFSETIQEFqEADNAVYPRIARICKNDIGGVYILRNQWTTFAKARLNCSLPGK 255  Trichoplax ad...
Feature 1                                                                                         
EFZ11332      320 FPFYYDEIQGAAYHPEEGIIYATFTTPINGIAGSAICAFNMSAVFVSFNGPFKYQENAGAAWerrpvahhnr-------q 392  red fire ant
XP_003207727  294 IPFYYNELQSTFYLPEQDLIYGVFTTNVNSIAASAVCAFNLSAITQAFNGPFRYQENPRSAWlptanpipnfqcg--tls 371  turkey
Q62217        284 VPFYYNELQGTFFLPELDLIYGIFTTNVNSIASSAVCVFNLSAISQAFNGPFKYQENSRSAWlpypnpnpnfqc---gtm 360  house mouse
XP_002110163  256 FPFYFRNIKDIFRMEDTKTTYAVFTTLSNGLPGSAICAFKDEAINAVFASDYIRRDENGKWQkatnpghiekcetyetsi 335  Trichoplax ad...
Feature 1                  #   #  #                                                               
EFZ11332      393 rcgspsstaPHQIMDNQRYQLMDEAVQSTMlEPLHTATLERFIHIAVDVTPTKlhrsVTVLYVSTATGLIKKISvlp-rt 471  red fire ant
XP_003207727  372 ddspnenltERVLQDAQRLFLMNDVVQPVTvDPYVTQDSIRFSKLVVDIVQGKdt-lYHVMYIGTEYGTILKALsttnrs 450  turkey
Q62217        361 dqglyvnltERNLQDAQKFILMHEVVQPVTtVPSFMEDNSRFSHLAVDVVQGRet-lVHIIYLGTDYGTIKKVRaplsqs 439  house mouse
XP_002110163  336 srgqpagttKRDLFQAMKYQSMAKVVQPIQkIPLVVMNDVRFSKLMIDKVQIRggqhVQIFFVATDHGTVLKMYqph-gr 414  Trichoplax ad...
Feature 1                                                       
EFZ11332      472 qETCIVEIWGSLp----SPPMTLQFLKDTQSLYVGMEiGLLRIPAV 513  red fire ant
XP_003207727  451 lRSCYLEEMQILpdgqrEAIKSLQILHSDRSLFVGLNnGVLKIPLE 496  turkey
Q62217        440 sGSCLLEEIELFperrsEPIRSLQILHSQSVLFVGLQeHVAKIPLK 485  house mouse
XP_002110163  415 qKLCTIEEIKISsamkgEKITNMLFIKKEKYLFITTEtKVLRIGIN 460  Trichoplax adhaerens

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