Conserved Protein Domain Family
Sema_1A

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cd11237: Sema_1A 
The Sema domain, a protein interacting module, of semaphorin 1A (Sema1A)
Sema1A is a transmembrane protein. It has been shown to mediate the defasciculation of motor axon bundles at specific choice points. Sema1A binds to its receptor plexin A (PlexA), which in turn triggers downstream signaling events involving the receptor tyrosine kinase Otk, the evolutionarily conserved flavoprotein monooxygenase molecule interacting with CasL (MICAL), and the A kinase anchoring protein Nervy, leading to repulsive growth-cone response. Sema1A has also been shown to be involved in synaptic formation. It is a member of the semaphorin family of proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module.
Statistics
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PSSM-Id: 200498
Aligned: 14 rows
Threshold Bit Score: 725.277
Created: 6-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative plexinputative
Feature 1:putative plexin binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of semaphorins 6A and 4D to their receptor plexins A2 and B1, respectively

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                             ####                       
Q26473        45 ESHKDHFKLLEkDHNSLLVGARNIVYNISLRDLTEfteQRIEWHSsgaHRELCYLKGKSEDDCQNYIRVLAKIDDDRVLI 124  American grass...
Q17330        49 SDESDHFKLLAaDGDSLLVGARNAVYNLSLSTLSVn--HKIDWKPpaeHIEECIMKGKSKTDCQNYIRVLARKSAGVSLV 126  Caenorhabditis...
Q26972        43 ATFPDHFIVLNqDETSILVGGRNRVYNLSIFDLSErkgGRIDWPSsdaHGQLCILKGKTDDDCQNYIRILYSSEPGKLVI 122  confused flour...
EFR19219     158 GNSSDHFKLLDqNEDTLLIGARNAVYNISIEQLVElngQRIVWPSsdaHRELCILKGKQEPDCQNYIRVFARVAPNRLMV 237  Anopheles darl...
NP_611244     55 GNSTDYFKILDhNDEFVLVGAKDVIYNVSLNGLKEi--ARLEWHStdaDRELCALKGKHEWDCHNYLRVYALRPNGEVLL 132  fruit fly
ADY41474      54 ERESDHFKLLAcDRNSLMVGARDAVYNLSMASMEVq--HTIEWAPngrTVEDCLMKGKSRLECHNYIRVMVLQANGRCLI 131  pig roundworm
EFX69865      13 HSHPDHFKLLEtNGDSILVGARNIIYNLSLNEMTEnraQRVEWYPastHREMCLVKGKSEDDCQNYIRVLARINDEEMLV 92   common water flea
XP_003249452  44 ESHVEHFKLLErATTSILIGARNAIYNISLHDLTEivdQRLQWSSsgaHRELCYLKGRSEDECQNYVRVFGRQGPDQFLV 123  honey bee
XP_001952857  49 NTHTDYFKTLLrDGNNILIGARNAVYNISLADLSEn--QRLEWHStdaDYKMCLVKGKDEDNCQNYIRVLAKMSAGRLLV 126  pea aphid
XP_001944597  53 KTATDYFKILLqDQTTALIGSRNVLYNISLDTMKEn--HKYYWNSseaNYEMCQLKGKSEDDCQNYIRVAYKKNDEELFV 130  pea aphid
Feature 1                                                  ##   #                      # ##      
Q26473       125 CGTNAYKPLCRHYalkdgdy--------------vvekeyeGRGLCPFDPDHNSTAIYS--EGQLYSATVADFSGTDPLI 188  American grass...
Q17330       127 CGTHAFSPKCREYtvtefgi--------------rntrqfdGQGISPYDPKHNSSALYVpgTNQLFVATVTDFVGNDALI 192  Caenorhabditis...
Q26972       123 CGTNSYKPLCRTYafkegky--------------lvekeveGIGLCPYNPEHNSTSVSY--NGQLFSATVADFSGGDPLI 186  confused flour...
EFR19219     238 CGTNSYKPLCRYYnvlpsngti-----------vydnneqeAQGRCPYNPQHNSTYVYTs-DGQLYSATVADFSGADALI 305  Anopheles darl...
NP_611244    133 CGTNSYKPRCRHYtpvevsseeagsaghahamryevsrdveAQGLCPYSPAHNSTYAFA--DGHLYSATVADFSGGDPLI 210  fruit fly
ADY41474     132 CGTYAFSPKCREYvysgdehs------------lqqrrqfdGQAISPYDPKDNSTAVFIaeTSEIYTGTVSDFAGNDPLI 199  pig roundworm
EFX69865      93 CGTNAYNPLCRRYgrngsgv--------------evlrefsGKGLSPYDPNHNSTAVFS--DGELYAGTVSDFSGLDPLI 156  common water flea
XP_003249452 124 CGTNAYKPACRQFtikdgay--------------akesdmdGLGLCPYDPRHNSTAVFV--EGQLYAATVADFSGGEPLI 187  honey bee
XP_001952857 127 CGTNSYKPLCREYiiepgky--------------kldkespGQAVCPYDPKHNSTYAYV--DGNLFSATVADFSSMDPII 190  pea aphid
XP_001944597 131 CGTNAFHPMCKIFnltdgtk---------------gveemdGRGRCPYDPLHNSTSIYA--GDQLYSGTVADFSGSDPLV 193  pea aphid
Feature 1        #                #  ## #    #                     #                         ####
Q26473       189 YRGP------------LRTERSDLKQLNAPNFVNTMEYNDFIFFFFRETAVEYI--NCGKAIYSRVARVCKHDKGGPHQF 254  American grass...
Q17330       193 YRKTidetpssksaanIRTQSYDARVLNAPNFVATFAYKEHVYFWFREIASEAIdnNEEPQIYARVARVCKNDKGGARPA 272  Caenorhabditis...
Q26972       187 YREP------------QRTELSDLKQLNAPNFVNSVAYGDYIFFFYRETAVEYM--NCGKVIYSRVARVCKDDKGGPHQS 252  confused flour...
EFR19219     306 YRET------------QRTEHYDSKQLNQPAFVSAIEHNGYVMFFFREVAIEYM--NCGKAIYSRVARVCKNDKGGPYPF 371  Anopheles darl...
NP_611244    211 YREN------------LRTEQYDLKQLNQPDFVGAIERNGYVLFFFRELSMEVM--NFGKAVYSRVARVCKNDRGGPYSH 276  fruit fly
ADY41474     200 YRKRlsd------ddgLRTQRDDLKVLDSPNFVASFAYGAHVYFWYREWAAEAT--DGDRQVYARVARVCKGDRGGARPA 271  pig roundworm
EFX69865     157 YKDP------------LRTEQYDFKHLNAPNFVSSVADGDYVYFFLRETAVEYI--NCGKTVYSRVARVCKNDKGGPHRW 222  common water flea
XP_003249452 188 HRDK------------IRTERSDLNQLNGPNFVSSFAYEDYVFFFYRETAVEYM--NCGKAVYSRVGRVCQHDKGGPHAF 253  honey bee
XP_001952857 191 YKEQ------------LQTEQYDSLSLNAPHFVHSFAHGDFVYFFFRETAVEYI--NCGKNVFSRVARVCKNDRGGPQQL 256  pea aphid
XP_001944597 194 YKEP------------MRTERLDFKQLNDPNFVSSLEYKDYIFFFFREIAVEYI--NCGKTIYSRVARVCKHDKGGPHSY 259  pea aphid
Feature 1        # #                                                                             
Q26473       255 GDRWTSFLKSRLNCSVP-GDYPFYFNEIQSTSDIIEGNYGgq-veKLIYGVFTTPVNSIGGSAVCAFSMKSILESFDGPF 332  American grass...
Q17330       273 NERWTSYLKARLNCSLPsGSSPFYFNELKAVSDPIDAGNNn----HVVYTVFSTPDSDVRMSAVCKFSMKKIREEFDNGT 348  Caenorhabditis...
Q26972       253 RDRWTSFLKARLNCSIP-GEYPFYFDEIQSTSDIVEGRYNsddskKIIYGILTTPVNAIGGSAICAYQMADILRVFEGSF 331  confused flour...
EFR19219     372 QDRWTSYLKARLNCSIP-GEYPFYFDELQATTKTINGTYGgd-rnQIIYAIMTTPENAIGGSAVCAFSVQDILEAFEGPF 449  Anopheles darl...
NP_611244    277 GKSWTSFLKARLNCSVP-GEFPFYFDEIQAISPIVESGSK-----SLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEF 350  fruit fly
ADY41474     272 HDRWTSFVKARLNCSYP-GKTPFYFNELQAVTEPVPAGDGs----TIVYAVFTTPQSIVRMSAVCAFRMEAIKRVFDYGH 346  pig roundworm
EFX69865     223 SNRWTSFLKSRLNCSLP-GDFPFYFDEIQSTSDVVEGTYGhr-teRLIYGVFTTPENSIYGSAICAFRLQDVMDSFDGAF 300  common water flea
XP_003249452 254 NDRWTSFLKARLNCSVP-GEYPFYFNEIQSTSDVTEGVYAge-raRLVYGVFTTPVNSIGGSAVCAFSMKNVLEVFQGAF 331  honey bee
XP_001952857 257 KNRWTSYLKSRLNCSVP-GEFPFYFNEIQSSTDLVQGVYGtk-qhFMMYGVFTTPVNSITGSAVCAFSLSDVLDSFEGEF 334  pea aphid
XP_001944597 260 RDRWTSFLKARLNCSMP-GEYPFYFDEIQDTSDILNTALTgi-vdPIVYGVFNTPVNAISGSAVCMFNISDVIETFMGSF 337  pea aphid
Feature 1                                            #   #  #                                    
Q26473       333 KEQe-TMNSNWLAvps-lkVPEPRPGQCVNDSRTLpDVSVNFVKSHTLMDEAVPAFFtRPILIRISlqYRFTKIAVDQQV 410  American grass...
Q17330       349 FKHqnNAQSMWMAfnr-neVPKPRPGSCSPDSTKLpENTVSFILHHPLLHRPIPSVA-APLLVEGAdrADLTQITVLPRV 426  Caenorhabditis...
Q26972       332 KHQe-TINSNWLPvpq-nlVPEPRPGQCVRDSRILpDKNVNFIKTHSLMEDVPALFG-KPVLVRVSlqYRFTAITVDPQV 408  confused flour...
EFR19219     450 KAQr-DIHSNWLQvpq-saVPEPRPGKCVDDSRTLpKASVNFVKSNNLMDSAVRSLHsRPVFTRVSlyYRLSAIAVDPQV 527  Anopheles darl...
NP_611244    351 KSQk-DSQSHWLPver-eqVPKPRPGQCVEDSRTLtSIAVNFIKNHPLMEEAVPAVHgRPLLTKVNlhHRLTAIAVHPQV 428  fruit fly
ADY41474     347 FKVqqSAQSLWMPyrshqmISVPRPGSCVADSSKLpESTVSFITRNPLMHEAVPATHpRPILVQGPerSELTQIAVAAQI 426  pig roundworm
EFX69865     301 KEQn-SMNANWLPvsg-ndVPEPRPGQCVNDSRTLpEVTLNFIKSHSLMDESVPAFYgLPLVTHTSlkYKFTKLVVDPQV 378  common water flea
XP_003249452 332 KEQe-TINSNWLRvlp-ekVPEPRPGACVNDSRTLpDVTVNFVKAHPLMDDAVQSFFsLPVITKVSfnYRFTKVAVDPQV 409  honey bee
XP_001952857 335 KEQt-YMNNNWLPvpg-skVPDPRPGQCANDSRTLpDLTLNFIKSHSLMDEAVRSFYqQPIIVRTSvnYRFTVIAVDPQV 412  pea aphid
XP_001944597 338 KDQe-AMDSNWLPvk---kIPEPRPGTCVDDSRTLpDITVNFIKSHSLMDGAVPSLFsKPIFTRISlqSRLTSIAVDNQI 413  pea aphid
Feature 1                                                                                        
Q26473       411 RTPDGkaYDVLFIGTDDGKVIKALNsasfds---sdtvdSVVIEELQVLpp---gVPVKNLYVVRmdgd-dskLVVVSDd 483  American grass...
Q17330       427 RAVGGhnYDILFIGTSDGKVLKVVEvd----------gnATVIQSATVFqr---gVPIVNLLTTKe------sVVIVSAd 487  Caenorhabditis...
Q26972       409 KTINNqyLDVLYIGTDDGKVLKAVNipkrh-----akalLYRKYRTSVHph---gAPVKQLKIAPgy----gkVVVVGKd 476  confused flour...
EFR19219     528 LALDGlrYDVIFVGTNDGKVIKFVNilsant---sddvrTVVISETQAFpp---gTKISELTISKrn----saLIVIGAg 597  Anopheles darl...
NP_611244    429 KSLSGayYDVIYSGTDDGKVTKFINilsthpnstvdrlkTVVISEMQVLpl---gTPIRELVISTsk----nsLVVVSDg 501  fruit fly
ADY41474     427 RSVRGalHNALYLGTSDGRVLKVIDpgd---------gtTSLIESTRVFtr---sVPVVNLMATSd------qLVVVSAd 488  pig roundworm
EFX69865     379 RTADGktYDILIIGTDKGKVIRAINtesyds---vskvrPVVIEEIKVFet---eAAITNLRVVPqtdtmgprLIVVSNd 452  common water flea
XP_003249452 410 KALDGkaYDILYVGTDDGRVLKALNtrapds---lsnvsQVIVSDVQVLky---gQAIKDLLVVHlage-askLVVFADs 482  honey bee
XP_001952857 413 KAIDGktYDVLFIGTDSGKVLKAINaasadt---nekvsPVVIEELYEFggpgttTAVRNIKLEDk------rLLVITDr 483  pea aphid
XP_001944597 414 SGLKGqyYDILFMGTDDGRLVKGALhtnn------glpeFVNIEEVNLTsnntksLPVRTLNIIKsvdgkpgrIVVTFDq 487  pea aphid
Feature 1                  
Q26473       484 EILAIKLHRC 493  American grasshopper
Q17330       488 EIASLPVHNC 497  Caenorhabditis elegans
Q26972       477 EIRLANLNHC 486  confused flour beetle
EFR19219     598 KIVTLPLHTC 607  Anopheles darlingi
NP_611244    502 SLVSVPLHHC 511  fruit fly
ADY41474     489 EIAAIPLYNC 498  pig roundworm
EFX69865     453 EIQTIPLHRC 462  common water flea
XP_003249452 483 EIRAVPLHHC 492  honey bee
XP_001952857 484 QVVSLPLDRC 493  pea aphid
XP_001944597 488 HIISVPLDRC 497  pea aphid

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