Conserved Protein Domain Family
M35_like_1

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cd11007: M35_like_1 
Peptidase M35-like domain of uncharacterized proteins
This family contains proteins similar to the M35 Zn2+-metallopeptidases, also known as the deuterolysin family, presumably these are bacterial metalloendopeptidases that have yet to be characterized. Typically, members of this family of extracellular peptidases contain a unique zinc-binding motif (the aspzincin motif), defined by the HExxH + D motif where an aspartic acid is the third zinc ligand; however, members of this family do not contain the GTXDXXYG motif C-terminal to the His zinc ligands that is typical for the M35 proteases. Deuterolysins are highly active towards basic nuclear proteins such as histones and protamines, with a preference for a Lys or Arg residue in the P1' subsite. MEPs specifically cleave peptidyl-lysine bonds (-X-Lys-) in proteins and peptides. Many members of the M35 peptidases display unusual thermostabilities.
Statistics
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PSSM-Id: 199913
Aligned: 25 rows
Threshold Bit Score: 102.922
Created: 19-Aug-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activeputative Zn
Feature 1:putative active site [active site]
Evidence:
  • Comment:by similarity to other members of this family
  • Comment:The conserved Tyr residue, three residues C-terminal to the zinc-binding Asp, acts as a proton donor during catalysis
  • Comment:11679721

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
CAR54570      46 ICPnm----tNRQFRITASRLLKWSIILVERRItdlkr----ydkttKDRMIYWFNRCd------eNTRQYLLDGFSRHL 111  Burkholderia c...
AEF99297     160 LSNa------SQEGLKWVHKAMTVAGNPKKDKN--------------FAIVARWFADNsskdedmiAAAATLNAGLKKIA 219  Methylomonas m...
EFQ63709     595 IAAls---swKAQCIDEALNVATYYTVTCKRNLvhfaa-----lrdaNSRLGRFFSELfgivtltaDQVQRIERRVDEVL 666  Pseudomonas fl...
EGL04443     139 LAEe------EETFGASRRKMMSDALQLARKWSmdiviklgtadastLAVVKRWFHTDsateqevkATAAVLLDGYKKIE 212  Methylomicrobi...
YP_558737    352 FTPaqg--giVTRAYQHVKRMIDSALDKLESGHp-------------DGNFARWFGSPt------qRNVQKVEQVFTRMQ 410  Burkholderia x...
EFB30443     112 IVKid----lASVIANAIKRLKEMIDNRLNNEEd------------fNKYFDKWFGDVhs-----kEEKQKMRDRMIKMN 170  Prevotella ori...
ABU79697     811 VYEmeeskrpSPEVMKKALQAQKEMLLKRKAELerws-------eedQKAFKKAFGRTd------dASRKKIAAAVDKEI 877  Enterobacter s...
EGB76648      24 ITDh------FKIMIDKARKAQKLVLIKRADDLlrwg-------aqeEYDFSKIFGVKg-------NKEVNIRKYGHNTG 83   Escherichia co...
ADN46246      15 VCIvkk--eiTNKFNEIITNALAEQLVVLNKRKkdlyr----weeteKKEFLDIFGRNe------iEANKWLLRGVEAMI 82   Escherichia co...
YP_004511799 154 IFSdee-rglMCDALGLSLKIAMDAQVKVDAKGke-----------tKEIIKRWFLDDtcgdtemnDAISKLSAGIKKIS 221  Methylomonas m...
Feature 1                                                                                        
CAR54570     112 Silktl--------tphhfVRSDPnldr---mlgCVPNmvdidneAAHVCgpnterrlisIAMKFCtgl----rdqNMFg 176  Burkholderia c...
AEF99297     220 Aklks-----------gqlIYTDSvse-----rgTTENqg----tEAFVWgd-------pLDVVYIe--------eEFFg 264  Methylomonas m...
EFQ63709     667 Delin-----------ptlVGPDSkrfvsgtdryRSQDs------FAFVLpt------deEHKIYLl--------gRFFd 715  Pseudomonas fl...
EGL04443     213 Avcns-----------ttvIFSDRph------krADKDwnd--ttFASVRad------dtLPVIYIfqafldagkrTFFg 267  Methylomicrobi...
YP_558737    411 Ha-----------------MSHDRftf-----vlGAPHdd---seLAHVQpg-------sPHQINLk--------pHFFd 450  Burkholderia x...
EFB30443     171 NlldkmvnrngtlnenyfeFNNDD----------KKYNv------FAYVYsn------daNHVVTVcp-------eTFSe 221  Prevotella ori...
ABU79697     878 Eln--------------dsMSYDNfk-------fADQNv------HAYVFqgd-----teDHFIYIg--------nKFSg 917  Enterobacter s...
EGB76648      84 Rrmnarflmm-dgvrrlmiIANDLtm-------sSFINytgcnefAAFVSpsk-----dmPYIINIga------kfEYRd 144  Escherichia co...
ADN46246      83 Lvn--------------qrVKSNCf---------KYQGde---ciFAKVQggi-----ssENPVIVg--------pKFFh 123  Escherichia co...
YP_004511799 222 Aacns-----------tslVFTDYld------wrKQRNdy---fgAAFRGgeg-----ggFPVIYLe--------gAFTr 268  Methylomonas m...
Feature 1                                  ##  #                #  #                             
CAR54570     177 d------------------sSLSTVIHEVTHFvd--------tfGSGDPRYg---LDPTAAAwar-------------an 214  Burkholderia c...
AEF99297     265 tsntl----------tgltnWARIVVHELTHRe----------vKTKDHAYehqgINPKKLS------------------ 306  Methylomonas m...
EFQ63709     716 ppmdiyqnrltapfnlsahaRATVLIHEITHIr----------sSTEDLAYld-sMRPFADLinv-------------di 771  Pseudomonas fl...
EGL04443     268 nip-------------klwlCALTVVHELSHKk----------vHTDDIRYdydgLKPGSGIs----------------- 307  Methylomicrobi...
YP_558737    451 haf-------------gantPEATIAHELSHFpy--------igNTRDHLYgpaaVAGLAQRn----------------- 492  Burkholderia x...
EFB30443     222 rnst------------tfdtPAGVIGHECSHFdd--------igGTDDFEYg---LQNCLELtn---------------t 263  Prevotella ori...
ABU79697     918 dplt------------gpdsQVVTLSHEMSHYnd--------vlGTDDITIgnmdFEKAAINfaq-------------dc 964  Enterobacter s...
EGB76648     145 gkknp---------vtgkdsHVATLCHEMSHIqwyygdnkkggmWSQDYTTtd-kYSTCKEDevsydehirtatkliskq 214  Escherichia co...
ADN46246     124 aavk------------gydsQVSTLCHEFSHLse--------vlYTDDLSPpgknAETTSAEeyrehae-----nlvkak 178  Escherichia co...
YP_004511799 269 lkgns----------gklwlCAETILHELSHHe----------vRTQDHRYdssgLKPDKAKl----------------p 312  Methylomonas m...
Feature 1                         
CAR54570     215 PDQAL-RNADTLTGFVI 230  Burkholderia cenocepacia J2315
AEF99297     307 AAKAI-ENADSWAWFCA 322  Methylomonas methanica MC09
EFQ63709     772 PGAALmKTDLEDVRETA 788  Pseudomonas fluorescens WH6
EGL04443     308 PANAI-KNADSWAYFGA 323  Methylomicrobium album BG8
YP_558737    493 SDMAT-DNAENYGMFIR 508  Burkholderia xenovorans LB400
EFB30443     264 PEKAI-NNADSFEYFLE 279  Prevotella oris F0302
ABU79697     965 SDNAL-DNAYNFERYFQ 980  Enterobacter sakazakii ATCC BAA-894
EGB76648     215 KDQIF-ENAYNIERYFE 230  Escherichia coli MS 57-2
ADN46246     179 SRDVM-INGYNIERYFE 194  Escherichia coli ABU 83972
YP_004511799 313 FAKTI-ENADSWGYFML 328  Methylomonas methanica MC09

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