1G12,1EB6,2X3A


Conserved Protein Domain Family
M35_like

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cd11005: M35_like 
Click on image for an interactive view with Cn3D
Peptidase M35 family
Family M35 Zn2+-metallopeptidase domain, also known as the deuterolysin family, contains fungal as well as bacterial metalloendopeptidases that include deuterolysin (EC2.4.24.39), peptidyl-Lys metalloendopeptidase (MEP), penicillolysin, as well as uncharacterized sequences. Typically, members of this family of extracellular peptidases contain a unique zinc-binding motif (the aspzincin motif), defined by the HExxH + D motif where an aspartic acid is the third zinc ligand and is found in a GTXDXXYG motif C-terminal to the His zinc ligands. Deuterolysins are highly active towards basic nuclear proteins such as histones and protamines, with a preference for a Lys or Arg residue in the P1' subsite. MEPs specifically cleave peptidyl-lysine bonds (-X-Lys-) in proteins and peptides. Penicillolysin, a thermolabile protease from Penicillium citrinum, strongly hydrolyzes nuclear proteins such as clupeine, salmine and histone. Many members of the M35 peptidases display unusual thermostabilities.
Statistics
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PSSM-Id: 199911
Aligned: 4 rows
Threshold Bit Score: 191.342
Created: 28-Oct-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active siteZn binding site
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:The conserved Tyr residue, three residues C-terminal to the zinc-binding Asp, acts as a proton donor during catalysis
  • Structure:1EB6: Aspergillus oryzae deuterolysin binds zinc; contacts at 4.0A
  • Comment:11679721

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1G12_A      4 GCSsseQSALAAAASAAQSYVAESLSYLQtht-----aaTPRYTTWFGSYisSRHSTVLQHYTDMNSndf-----ssYSF 73  Grifola frondosa
1EB6_A      5 DCKgdaESSLTTALSNAAKLANQAAEAAEsg-------dESKFEEYFKTTdqQTRTTVAERLRAVAKeagst-sggsTTY 76  Aspergillus oryzae
2X3A_A    180 RCTntqKSDLLTALDAASGISNNASSYLAvdk-----pdGQRYRSWFGAYssARWDQAETNFSKIKDaid----nkpLTF 250 Aeromonas salmonic...
CAR54570   46 ICPnmtNRQFRITASRLLKWSIILVERRItdlkrydkttKDRMIYWFNRCdeNTRQYLLDGFSRHLSilktltphhfVRS 125 Burkholderia cenoc...
Feature 1                                                                           ##  #     
1G12_A     74 DCt------CTAAg-----tFAYVYpn------rfGTVYLCg-----AFWkaptt-----gtdsQAGTLVHESSHftr-- 124 Grifola frondosa
1EB6_A     77 HCndp-ygyCEPNv------LAYTLps-------kNEIANCd-----IYYselpplaqkchaqdQATTTLHEFTHapgvy 137 Aspergillus oryzae
2X3A_A    251 DCs------CKQSy------FAYVYpd------qpYKVYLCk-----SFWtapvt-----gsdsRAGTIVHQLSHfnv-- 300 Aeromonas salmonic...
CAR54570  126 DPnldrmlgCVPNmvdidneAAHVCgpnterrlisIAMKFCtglrdqNMFgd-----------sSLSTVIHEVTHfvd-- 192 Burkholderia cenoc...
Feature 1          #  #                             
1G12_A    125 nggTKDYAYgQAAAKSLat-mdPDKAVMNADNHEYFSE 161 Grifola frondosa
1EB6_A    138 qpgTEDLGYgYDAATQLs----AQDALNNADSYALYAN 171 Aspergillus oryzae
2X3A_A    301 vagTDDLGYgQANARNLak-tdPVKALNNADNHEYFAE 337 Aeromonas salmonicida subsp. achromogenes
CAR54570  193 tfgSGDPRYgLDPTAAAwaranPDQALRNADTLTGFVI 230 Burkholderia cenocepacia J2315

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