Conserved Protein Domain Family
CE4_RC0012_like

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cd10963: CE4_RC0012_like 
Putative catalytic NodB homology domain of uncharacterized protein RC0012 from Rickettsia conorii and its bacterial homologs
This family contains an uncharacterized protein RC0012 from Rickettsia conorii and its bacterial homologs. Although their biochemical properties remain to be determined, members in this family seems to be composed of a seven-stranded barrel with detectable sequence similarity to the six-stranded barrel rhizobial NodB-like proteins, which remove N-linked or O-linked acetyl groups from cell wall polysaccharides and belong to the larger carbohydrate esterase 4 (CE4) superfamily.
Statistics
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PSSM-Id: 200585
Aligned: 12 rows
Threshold Bit Score: 273.409
Created: 3-Jun-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activeNodB motif
Feature 1:putative active site [active site]
Evidence:
  • Comment:based on similarity to other CE4 superfamily members
  • Comment:The Asp residue in the classical His-His-Asp zinc-binding motif of CE4 esterases is mutated to a hydrophobic residue (Leu or Met) in this subfamily.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               ##                                                               #   #   
Q92JQ5       113 KGQFLTIDMCPSs-KSFEKdFFKKLVELSIKLNkpiPIAICVSGLWINkHTEEFLWLLKQQENgylQITWVNHSFSHPYf 191 Rickettsia conorii
NP_907165    105 ESHYLSVDLCPSrhKGFEE-RLWTLLEARQKAF---PVIVCVSGRWMDsHKEEWAALIQKERQgslEILWCNHTYDHFYe 180 Wolinella succi...
YP_003656146 126 HEMYLTIDMCPSskKGYEQeLFEKFLDLKQIDKk-iPIAISITYRWVKgHKKEFLSLINNKKL---DITWINHSRNHYYd 201 Arcobacter nitr...
ZP_03968171  123 QGINLTIDLCPSh-KPFDRvIFQSLFSAFKGKSgrlPVAISVSGKWILkHQEDLNWLKNLDKDgalQITWVNHSYSHVYn 201 Sphingobacteriu...
ADW15144     131 DGVFLTVDLCPSk-RPFEReMFEAAALLSHGTPv--PVAVMVSGLWLAsHPDEVAYLKGEIAAgrlAVTWVNHSWHHHYd 207 Geobacter sp. M18
YP_002362607 151 EGSFLTGDLCPSr-KPLDR-AFLQGIEALGLAT---PVSLSISGLWLKrHGADFQWLLHEARAgalTITWVNHSFHHPYv 225 Methylocella si...
YP_001229602 139 DGLFLTVDMCPSk-RPFEQeMFTAVAELSRKGGgpvPLAVAMTGAWLElHRDDLAWIKGAVAAgklAITWVNHSNSHPYe 217 Geobacter urani...
ZP_07748129  123 TGITLTADLCPSh-RPLDRrIFTDIFQQFQKVErpvPIALSVTGIWMKqHQDDLAWLKEMQLKneiYITWINHSYNHRVs 201 Mucilaginibacte...
YP_004273720 119 KGVNLTMDLCPSh-RQLDRiVFDSTYNYFQGKEeniPIGISVSGKWMQqHPEDLEWLKYLSKSgkwNIIWINHSYNHFMn 197 Pedobacter salt...
ZP_08071709  133 GGAFITGDLCPSh-KPLDH-AFIDEVAAQGPGT---PLTLAVSGGWIAhHAEDFAWLQEKVRSgalAISWANHSYSHPYv 207 Methylocystis s...
YP_001957795 138 KGYFLTVDMCPSs-KSFDKeFFEKLILLRQNQTp-fPVGIGITGLWMLsHPDEFAWLCKQHNQrklNITWVNHTFRSQYy 215 Candidatus Amoe...
YP_004167709 107 NGLYLTTDLCPSskKGFEQrLYEALIDRFPHPV---PVTLFITKRWIDkHPNAFAQFKSWKEKgdlAITWGNHTAWHHYh 183 Nitratifractor ...
Feature 1                                                               ###                #     
Q92JQ5       192 k-dkPLEDNFLLs-------------NKDDFENEVLEAGKILVSyNIAPSPFFRFPGLV-SDQTLIEKLKDLGFIpLGSN 256 Rickettsia conorii
NP_907165    181 k-nlPLERNFLRh-------------ESQNLSKEVLQLEKRWLKeGILPSPFFRFPGLI-SSPSLMQELQKLGLIpLGAQ 245 Wolinella succi...
YP_003656146 202 knekVLEKNFMLy-------------FKTNLNVEILDVEKMLLLnNQIPSIFFRFPGLIsSAKINKRVINEFSLIpLGTS 268 Arcobacter nitr...
ZP_03968171  202 n--qPLTSNFLLs-------------KGTNMDVEVLENEKLMLRnGILPSVFFRCPGLV-SDKAVIDKLLSYGLIaVGSD 265 Sphingobacteriu...
ADW15144     208 p-qaPLDENFLLa-------------PGTDILSEVLELEQQLLArGLVPSPFFRFPGLV-SDRAAMARLAELSLIpVGAD 272 Geobacter sp. M18
YP_002362607 226 p-grPFANNFLLt-------------PGVDIQAEILDTEQILIAnGQVPSVFFRFPGLI-SDAVTMDAVRRDHLVtLGAD 290 Methylocella si...
YP_001229602 218 p-kvPLTRNFLLs-------------PGVDFEREVLSTELLLLEnGLVPSPFFRFPGLV-ADGRLLTKLRELSLIpIGSD 282 Geobacter urani...
ZP_07748129  202 k-tlPLKENFLLe-------------PGTNISYEVLETEKAMLRsGLLPSVFFRFPGLV-SDQQLIYSITGFGLIpIGTD 266 Mucilaginibacte...
YP_004273720 198 n--ePLTENFLLs-------------KGTDLNTEILQNEQLMIEkGITPSVFFRFPGLV-SDKAILEKVLHYGLIpIGAD 261 Pedobacter salt...
ZP_08071709  208 p-glKDAQNYLLr-------------PGVDLDREIFETEKLLIAhGETPSVFFRFPGLV-ADGALLEKLRERHLVaLGAD 272 Methylocystis s...
YP_001957795 216 h-dlPLEKNFLRfsivempeeerirfTQASLQDEVLLAEQLLLEyGQLPSIFFRFPGLV-SDEYLMRMVSNLGLIpIGTD 293 Candidatus Amoe...
YP_004167709 184 p-gkPMRENFVLs-------------PEENLTEDVLTLEKSLLEhGVTPSIFFRFPGLV-SDRRSVETVTRLGLItIGSN 248 Nitratifractor ...
Feature 1                        # #                     
Q92JQ5       257 AWLAKGEKVQN-GSFILVHGNSNEkAGIDLIMPMLPELKL 295 Rickettsia conorii
NP_907165    246 AWMAKGEIPQK-GGIILLHGNLNEpLGIDLFERFLEENQG 284 Wolinella succinogenes DSM 1740
YP_003656146 269 NWLVKSKKVAIdGNIILVHGNLNEhEGIKMLFKEVKDVKV 308 Arcobacter nitrofigilis DSM 7299
ZP_03968171  266 AWLAKGQHPGD-GSIVLIHGNGNEeLGVKDFIKLLQQENT 304 Sphingobacterium spiritivorum ATCC 33300
ADW15144     273 AWLAKGEEPRR-GSFILVHGNGNEpKGVKLVLPLLKGKGV 311 Geobacter sp. M18
YP_002362607 291 GWLVFMPPLRA-GAILLIHPNGNEpEGLRLFSKLLGQGRL 329 Methylocella silvestris BL2
YP_001229602 283 AWLAKGESPQN-GSFILVHGNGNEpQGIRKLLPLLREEKP 321 Geobacter uraniireducens Rf4
ZP_07748129  267 AWLAKGQQPQA-GSIVLIHGNGNEpIGVTDFIKLLQSKTK 305 Mucilaginibacter paludis DSM 18603
YP_004273720 262 AWLAKGQRPVN-GSIVLIHGNGNEeSGVKDWINLLKYNIR 300 Pedobacter saltans DSM 12145
ZP_08071709  273 SWLALGPPPRA-GSIVLVHPNGNEpGGLAIFSRLLKSGRM 311 Methylocystis sp. ATCC 49242
YP_001957795 294 AWLAKNERPQP-GSIILVHANGNEpSGLTKFMNWLDSVNK 332 Candidatus Amoebophilus asiaticus 5a2
YP_004167709 249 AWLAKGQRPRP-GSIILVHGNGNEpKGVDLFLKMLQKGEI 287 Nitratifractor salsuginis DSM 16511

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