Conserved Protein Domain Family
YdjC

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cd10808: YdjC 
Escherichia coli YdjC-like family of proteins
Uncharacterized subfamily of YdjC-like family of proteins. Included in this subfamily is the uncharacterized Escherichia coli protein YdjC (also known as ChbG), encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.
Statistics
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PSSM-Id: 212119
Aligned: 23 rows
Threshold Bit Score: 261.809
Created: 28-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative active site [active site]
Evidence:
  • Comment:This site has a highly negative surface charge.
  • Comment:based on similarity to Thermus thermophilus YdjC-family protein TTHB029.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               ## #                                                  # #                 
jgi:Vpar_0896   3 KLIVNADDFGLHSAVNAGIIDGHrrGIITSTSLMAGGEAFTEAVSMAKqn-----pKLGIGIHITLVGgvkpvcdpseVS 77  Veillonella pa...
Q08VN6          6 RLIVNADDLGMHPSLDAGILRAHreGIVTSATVLAMGPSAPQAVLQARe------qGLALGVHLAFSTrlpca-apatEV 78  Stigmatella au...
ABV27233        4 KLIVNADDFGMCVGVNAGVLRAHqsGIVTSTTIMANGLAFDDAVARLRda-----pRLGVGIHLVLMGgkpva-ppadVR 77  Candidatus Chl...
jgi:Sfum_3115   4 ILVINADDFGYTGGINATIQCCAaeGVLRNTTLMANGPAFDDAVAIAKan-----rSLSVGVHLNLTElkpva-spdkVP 77  Syntrophobacte...
Q84HB9          5 LLVVNADDYGLSEGISRGILRAHdaGVVTSVSVLAVGPAVARSAAWLRdr-----pALGVGAHLAAVGedppllsareIP 79  Streptomyces c...
YP_003203678    4 LLVVSADDFGLTDGVCRAVLRGHreGIVTATSLLAVGRSFDLAVRMLAdh-----pGLDVGAHLAIVGedppllsareIP 78  Nakamurella mu...
YP_821870       5 QLVVNADDFGFTPDVNQGIVEAHrgGILTATTMMANGTAFEDALRLWRvt-----pSLDVGCHLVLIG----------GE 69  Solibacter usi...
AEU35776        4 RLIINADDFGLTRGINRSILELHqaGVLTSATLMANGPAFDDAIAIAHan-----pTLGVGCHVVLTDgipls-ppqsIP 77  Acidobacterium...
ADW68520        4 RLILNADDFGLTPGINRGIVELHhaGALTSTTLMATAPAFEDAAALARtn-----pTLGIGCHLTFVDgfpaa-hpqsIP 77  Granulicella s...
ABF43030        3 RLIVNADDLGLTNGVNRAILQAHrdGIVTSATLMANAPAFDEAVAAVLtspayqakQLGIGCHVVLIDgvpls-pseqIR 81  Acidobacteria ...
Feature 1                                                              # # #                      
jgi:Vpar_0896  78 SLLTPEGVFpenyvef---ikriysGKINYSELRKEIHAQIAQIMDT-GLRVTHIDGHQHLHVLPTVLPIVIEQAKSFGi 153 Veillonella pa...
Q08VN6         79 PTVAPGGRLranwadf---arawltGRVRRGEMERELAAQLARVREL-GATVDHLDAHQHLHLLPGLRGCVEALAHREG- 153 Stigmatella au...
ABV27233       78 SLLGPDGTFpndfgvf---vrrllrRELRPAEMEVEFRAQVDKVLAA-GIRPTHLDSHKHAHAHPQVLEVLIRVAENYDi 153 Candidatus Chl...
jgi:Sfum_3115  78 TLVDETGAMqssprgl---aaalvsGAVSAGDIRRELLAQVSKIMDC-GIVPTHLDSHKHVHVLPPVLEVAIEIARRYSi 153 Syntrophobacte...
Q84HB9         80 TLVDRRGLFrrswraf---mtaavtGRVDMADVHREFQAQLDRLVDDlGLTLSHIDTHQHLHLYPPVAQIVTRLAADRGi 156 Streptomyces c...
YP_003203678   79 TLVDRRGAFplsyrtv---varaatGRLDPADVRREFTAQLARIRSA-GVRVTHLDTHQHTHLWPSVGRVVLDLAADAGa 154 Nakamurella mu...
YP_821870      70 SLVTGKAFPatvtq-------llvaLAKREIRVYDELAAQVRRIVDA-GVRPSHLDTHKHTHLAPPVLDAVGRLSEEFGi 141 Solibacter usi...
AEU35776       78 TLLGPDGKSfrptlss--flsaalrGRINSDEIAREAQAQIQRIRQA-GLQVTHLDTHKHTHMLPSVARPLLSVAEQNGi 154 Acidobacterium...
ADW68520       78 TLLGADGKTfrpslad--faqaalrGTIEPDDIARETQAQIQRLQRA-GIDVTHIDTHKHTHIFPAISAPVLHIAQRCGi 154 Granulicella s...
ABF43030       82 TLLGGRSPAphfrkklwkfalaavaGRISTDEVELEATAQIRKLQKA-GIELSHVDCHKHTHMFPRVLEGVLRAAQATGv 160 Acidobacteria ...
Feature 1                                                                                         
jgi:Vpar_0896 154 ----HAIRIPDESTGfmnymyspirflgkv---------glstvaanarpiirNNCMTTTQYFWGMang--------ghI 212 Veillonella pa...
Q08VN6        154 ----LPVRWPDRLPRaswlrapgp---------------------alktllltALARTAPRPPSGVrrvsaggvfeagrL 208 Stigmatella au...
ABV27233      154 ----RWLRCPHEHPQfvslaglrpgeiltfvkqk-asalalvryaadfqarlrTANVSAPDAFFGFaht--------glL 220 Candidatus Chl...
jgi:Sfum_3115 154 ----PWIRNPFEDASawrlitavgkndrrvflkqyaeaniikplqpvfrhfvrRSGLRTPDGFHGLsvt--------glW 221 Syntrophobacte...
Q84HB9        157 ----GAVRVPTSAAPgprglvirhw-------------------sralasrlsVAQLAFPQAYGGLdea--------gaM 205 Streptomyces c...
YP_003203678  155 ngsaVAVRTPRSGSGwppvgmavnl------------------laaglrrrvdRAGVPTTAAYAGLdqa--------gaM 208 Nakamurella mu...
YP_821870     142 ----RWVRRPFDFPFhaagvprmkrwtsd----------alglmrrrfhrvlsRHGCRTTDHFAGFqit--------grF 199 Solibacter usi...
AEU35776      155 ----GAVRNPFEEPWslaigkggwirglqvr------llhslrkrfealpqirSGSILTTNGTIGIsat--------grL 216 Acidobacterium...
ADW68520      155 ----PAIRYPFEPSWsaklaqapfarrvqlr------ilnlfapsfrriarepALHGFLPTGTLGIaat--------gtL 216 Granulicella s...
ABF43030      161 ----KAIRNPFEPAFarnipsadrtrareta-------ilerlwgknfgsavaKHGLSTTDGSLGVtat--------gtL 221 Acidobacteria ...
Feature 1                                      #                  #          
jgi:Vpar_0896 213 NQKSLMGILKAvnk------nsGTHELMVHPGsnssi-lsklyNWGYHWEDELHALCSS 264 Veillonella parvula DSM 2008
Q08VN6        209 DESTLLRLLDTlp--------sGDFEVGCHPGegsph-vpedpAWTYGWQSELSALTSP 258 Stigmatella aurantiaca DW4/3-1
ABV27233      221 NPALICCIIRLlp--------iGISELMCHPSelddtlrhyptRLKTERLRELAALTDP 271 Candidatus Chloracidobacterium ther...
jgi:Sfum_3115 222 NEKVLSRLVGRlk--------pGVNEWMVHPGvvdqalknartRLLGQREVERDILLSP 272 Syntrophobacter fumaroxidans MPOB
Q84HB9        206 TLPRFEALVDRlar-----gqaDAIEVNCHPGeptpg-draryAWGYRWEEELAGLTSP 258 Streptomyces carzinostaticus subsp....
YP_003203678  209 DAAAFRAAVTEltgsgdagrgpSTVEINTHPGeagdpdlgrfdWGGYHWSEELAMLCDP 267 Nakamurella multipartita DSM 44233
YP_821870     200 RAAELVALMAAlp--------eGSTELMVHPGrcghalrsaptRLKESREAELEALVSP 250 Solibacter usitatus Ellin6076
AEU35776      217 DSSTLRAMLDAmp--------eGHWELVCHPGyndrdldavttRLRVTREVERTALLES 267 Acidobacterium sp. MP5ACTX8
ADW68520      217 DAPTLRAILSAlp-------pvGTFELCCHPGhidsaltsintRLRASRQQELQALLEV 268 Granulicella sp. MP5ACTX9
ABF43030      222 TTEQFSNIIRNlp-------esGTYEFVCHPGfydadlasagtRLLESRQVELDLLCSS 273 Acidobacteria bacterium Ellin345

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