Conserved Protein Domain Family
YdjC_HpnK_like

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cd10804: YdjC_HpnK_like 
hopanoid biosynthesis associated protein HpnK and similar proteins
The subfamily includes some uncharacterized proteins annotated as hopanoid biosynthesis associated proteins, HpnK. They show high sequence similarity to proteins from the YdjC-family, the latter is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source.
Statistics
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PSSM-Id: 212115
Aligned: 23 rows
Threshold Bit Score: 343.078
Created: 25-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative active site [active site]
Evidence:
  • Comment:based on similarity to Thermus thermophilus YdjC-family protein TTHB029.
  • Comment:This site has a highly negative surface charge.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   ## #                                             # #                      
Q0BPF4              3 RIIVSADDFGLTSTVNEAVLDAHrnGILSTCSLMVAAPAAAEAVAMARatPSLRVGLHLVLVEGdavlpharIPALVDQQ 82  Granulibac...
Q39SY4              3 ELIINADDFGLSDGVNKAVIKAWqeGILTSASLMVGADAFHEAVHLAKanPGLQVGLHLTLVQGravgehpkFPRICDAK 82  Geobacter ...
EEF60930            9 RLIVNADDFGRSHSINQAVIHAHreGILTTGSLMVNEPACDEAVALARenPRLGVGLHLSLLCGrsaltpekIPGLVNEK 88  bacterium ...
jgi:Cyan7425_4972   4 RAVINADDFGFSPAVNQAIITAHreGILTSTSLMVTGAAADSAIELAYqhPNLGVGLHLVLVSGrsvlppakIPHLVDAT 83  Cyanothece...
EDY16389           19 QLIVTGDDFGRSHEVNEAIERCHeaGFLTQAGLMVHESHAEEAVRIAQrhPALCVGLHLTLCDGra----saISAITDAA 94  Chthonioba...
YP_004370596       13 RVIITGDDFGLAPAMNTAVIEAHeqGILTCASLMINGPAWQEAVNLARarPRLCPGLHLTLIQGravlppphVPHLVDSQ 92  Desulfobac...
ACD96797            3 KLIVNADDFGLSSGVNRAVEQAWqqGILTQASLMPGGAAFDEAVAIAKrnPGLQIGLHLTLVQGrpvlppemIPGLVAAN 82  Geobacter ...
ABL00425            3 QLIITSDDFGLSDGVNRAVEQAWrnGILTSASIMAGGEAFDGALDVSRrnPGLQVGLHLTLVQGrsvlpadaIPGLVDER 82  Pelobacter...
CCB66151            3 SLIVTADDFGMTVPVNEAIEASHknGILSATSLMTGGEAFADAVNRARqlPELGVGLHIHLVDSrpvlppeqVPDLVGPD 82  Hyphomicro...
ABW30741            6 YVIVNGDDFGFSHGVNEGIIQAHteGILTSTSLMVAGEAVDEAVDLAKqhPSLGVGLHVVLGCGkavlppeqIPHLVDEQ 85  Acaryochlo...
Feature 1                                                        # # #                                
Q0BPF4             83 GRFGSdqvrrGFTYFFSPSARRQLAEEIDAQFAAFRATGLTLDHANAHKHMHLHPTVGKLLCEIGRDYGLRAIRIPAEpp 162 Granulibac...
Q39SY4             83 GLFTDdpvhaGMRYYFIKPFRKQLHREIEAQIEGFLQTGIPLSHIDGHLNIHMHPVVFDILCELMPKYGITTFRLSREnl 162 Geobacter ...
EEF60930           89 AEFGNepaavGFRYFSRRSLHEQLRAEIHEQFKRFRATGLVMDHVNGHLHMHLHPTVFRILMEDAKELGIERLRLTRDpf 168 bacterium ...
jgi:Cyan7425_4972  84 GEFPNsslqaGLTYQFNRAARAELQLEIRAQLEKFRQSGLPLTHVDGHKHLHCHPVVIDILVSLAPEFNIPLIRLPQEel 163 Cyanothece...
EDY16389           95 GRFVTsparaGLRYAFRSSLAESLQCEIRAQFERFRAFGLAPTYWDGHTHLHLHPTVLRLTLPIALEYGFRATRLVREyp 174 Chthonioba...
YP_004370596       93 GNFRQqpvgaGFYYFFSRPVKQEIYAELQAQIEKMLDAGLRPWFLNGHLNIHLHPAVWPLVLDLAGQYNIPAVRLAREnl 172 Desulfobac...
ACD96797           83 GCFPDnpvavGMKLFFDPTIRMQLRCEIEAQILKIKETGLPLSHIDGHLNIQMHPTVFTLLTELMPLHGITSFRITRErl 162 Geobacter ...
ABL00425           83 GYFPDnpvaaGMRYYFDRGLRNQLKREIEAQLARARDAGIALSHIDGHLNIHLHPTVFSLLTELMPRYAIASIRLSRErl 162 Pelobacter...
CCB66151           83 GNFSNnpevfGFKLFFSPEMRRQAEAEITAQFERFEKTGLVMDHVNGHHHFHMHPVVTDAIAKLAPKFGSPPVRFPVEpf 162 Hyphomicro...
ABW30741           86 GQFPDnpaqaGWRYYFNQAARRELHQEIEAQLQCFLATGLSLSHVDGHLHHHANPAVLNVLMALAPKYNIPIIRLPYEel 165 Acaryochlo...
Feature 1                                                                                      #      
Q0BPF4            163 aimaacg----ektglsdtlLYRWTGMLRAQARKAGlSVNDHVFGLRwsghmtsDKLLRLSRHLpsGVTEIYTHPAsrpd 238 Granulibac...
Q39SY4            163 rsnlaidrsrlfgkatdafiFSKLANRCRPVLDRFGiGYTGEVKGLLssgrmteSYLLKALETLeeGTTEIYFHPGclpc 242 Geobacter ...
EEF60930          169 rlnaklvsgqwlyrgshafiYLCLSGRARPHLQKRGiRHTHKVFGLLqnakvdeRYLTKLLPHLpkGDSELYSHPSldef 248 bacterium ...
jgi:Cyan7425_4972 164 qlnlnwerqdwlrktlwwwiFNQLGQYGRSRLEAAGiQSMQRVYGLLqtgriseDYLLDLIPQIqaDAVEIYAHPVapl- 242 Cyanothece...
EDY16389          175 psss-----------llpaiFRQLSRAAQPGLQRHGiAFNDRIFGLRdtgkmttQILTSSLECLpdGLTEIYFHPGaepe 243 Chthonioba...
YP_004370596      173 rvtlslnp--rrptyktvhaLIFAWLSRRASQTLGGlKTNDHLFGLLndgwmdePFLLGLLPRLapGVTEIYFHPAvgpd 250 Desulfobac...
ACD96797          163 lenlridgsrllgktiergiFGSLAHYAENTFKRQEiETAVEVKGVLnsgcmteAYLLAILDRLqpGTSEIYFHPGclpd 242 Geobacter ...
ABL00425          163 thnlrfnrerlagkamerliFGSLARHARPTLDRMGiRYAAEVKGVLnsgrmteGYILAILDGLnrGLTEIYFHPGclpd 242 Pelobacter...
CCB66151          163 gpslqaggdkpirrffnwafYAGLTHRMRKKLESVDlKLNDHVFGVTdtggmteDRILAYLDHLpeGVTELYAHPAmgg- 241 Hyphomicro...
ABW30741          166 tytlkadsqgwlakglgwsvFRLLRRHGERVLSVQGiRYAERVYGLLqsgavteSYLMRLIPQIqaNVVELYAHPAiayp 245 Acaryochlo...
Feature 1                          #          
Q0BPF4            239 a--tlqalMPEYDQTGEYAALIDP 260 Granulibacter bethesdensis CGDNIH1
Q39SY4            243 t--eitrrMPDYRHEEELAALTSS 264 Geobacter metallireducens GS-15
EEF60930          249 r---neyeALISPKVKELVTQLGI 269 bacterium Ellin514
jgi:Cyan7425_4972 243 -----rgePANSQGAVELAALLSP 261 Cyanothece sp. PCC 7425
EDY16389          244 eidggklrSLATDYGITLRTSLPP 267 Chthoniobacter flavus Ellin428
YP_004370596      251 r--elqrwMPHYRHQEELAALTSP 272 Desulfobacca acetoxidans DSM 11109
ACD96797          243 a--eisrrMPDYKHAEELAALLSP 264 Geobacter lovleyi SZ
ABL00425          243 a--eitrrMPDYRHQEELAALMSP 264 Pelobacter propionicus DSM 2379
CCB66151          242 -----dgrPQSYPSFEEYRGLISP 260 Hyphomicrobium sp. MC1
ABW30741          246 h---epinGPEGAGERELAALLSP 266 Acaryochloris marina MBIC11017

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