Conserved Protein Domain Family
LamB_YcsF_like_1

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cd10801: LamB_YcsF_like_1 
uncharacterized proteins similar to the Aspergillus nidulans lactam utilization protein LamB
This mainly bacterial subfamily of the LamB/YbgL family, contains many well conserved uncharacterized proteins. Although their molecular function remains unknown, those proteins show high sequence similarity to the Aspergillus nidulans lactam utilization protein LamB, which might be required for conversion of exogenous 2-pyrrolidinone to endogenous GABA.
Statistics
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PSSM-Id: 212112
Aligned: 34 rows
Threshold Bit Score: 255.177
Created: 29-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative active
Feature 1:putative active site [active site]
Evidence:
  • Comment:based on similarity to Pseudomonas Aeruginosa hypothetical protein Pa4511 (2XU2).

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #                                                #          #              
YP_003585324   4 IDINCDLGEGgDYDHLLMPLISSCNIACGGHAGDIKTMRKTLNLAFENNTNIGAHPSYPDRENFGRRSMqiaAKDLKKSI 83  Zunongwangia pr...
ZP_01891643    5 ININADLGEGtGNDAALMPMLASCSIACGGHYGDEDTMRTSVQLAKKYGVKVGAHPSFPDLENFGRKKLtmtKKELQKSV 84  unidentified eu...
ABO21879       8 IDLNADLGEGgPQDEALLTLVTSANIACGGHAGDRQSMLATVKLAKAHHVKVGAHPSYPDRANFGRLSIaieAEPLFNSL 87  Shewanella loih...
ABL98233       4 LQLNADVGEGyPFDADIIALVDAANIACGGHAGDSNSMRATVKLAIANGCLIGAHPSFPDKANFGRQPMrmeAIALTTSL 83  Shewanella amaz...
YP_605267      5 IDLNADLGEGsPHEAAIMPHVTSANIACGGHAGDAETMRDSLRLAARHGVEAGAHPGFPDREGFGRRELhfsSTEVTAFV 84  Deinococcus geo...
YP_001547141   3 IDLNADLGEGsDFDAELMSLLSSCNIACGGHAGDQASMRTALQLAQQHNLCVGAHPSYPDRAHFGRVVLelePSQLQASL 82  Herpetosiphon a...
ACA84309      11 IDLNADLGEGgLHDEALLQIVTSANIACGGHTGDQQTMTVAVKAAVENNVKIGAHPSYPDPINFGRAPMdisNQALRESI 90  Shewanella wood...
EDP99600      10 IDLNADLGEGgANDAALLQVITSANIACGGHTGDQSSMQTTVKLALTSGVHIGAHPSYPDGENFGRQPMvisDQELLTSL 89  Shewanella bent...
YP_316569      2 IELNADIGEG-HEDDALMPYIARASIACGGHFGDAGSMRTALLRCAEYGVAAGAHPSYPDRAGFGRRRLaapPEEITRWV 80  Thiobacillus de...
ZP_01914670    1 MWINADLGEGcAHDEALFKIIDWANIACGGHAGDEHSIRLACKLALDHGVQVGAHPSYPDRAGFGRRKPegsATQLLSEL 80  Limnobacter sp....
Feature 1                             # ##   #                                                  #
YP_003585324  84 RDQVISLQEiakakgvRLHHVKPHGALYNDAAkDEKIAQIIVESLLEieddFSLFVPln--sVISEVAKd-KINIIFEGF 160 Zunongwangia pr...
ZP_01891643   85 YEQIMKLVVicnqegvELHHVKPHGALYNCAAiDAPTADAIVEAILEtklrPKLYTQhd--sVLYQKSKn-LLPIVPEAF 161 unidentified eu...
ABO21879      88 LQQINALKAvcdelgvDLHHVKPHGALYNDAAqDPALGRILIRVIETinptLKLMILag--sPLVMQARraGLEVIEEAF 165 Shewanella loih...
ABL98233      84 IDQIQALKQicdeegaTMFHVKPHGALYNQAAfDKELASCLIEAIQAvdakLVLMGLaa--sPLLQWAReaGLRVQAEAF 161 Shewanella amaz...
YP_605267     85 REQIEALKAvaaregvQLRHVKPHGMLYNMAVrDAVLAMAIAQAAAAsg-lPLYFGLageasVMLREAEalGLTAVGEGF 163 Deinococcus geo...
YP_001547141  83 TAQITQLQRlateqgtKVHYVKPHGALYNQAAiDSDLAQLLITTIQTidpsLALMGLag-ssLLEQAATa-GLQTIAEGF 160 Herpetosiphon a...
ACA84309      91 SEQIRALKSvcerlnaEMFHVKPHGAFYNKVAkDEAMGLILIEVIKQvdpsLKLMILag--sPLVKQAElaGLTVIQEAF 168 Shewanella wood...
EDP99600      90 YQQINSLKAvcdslgaKMFHVKPHGALYNQAAfNEHLGGILIDVIKRidptLKLMILag--sPLVNQAKshGLTIIEEAF 167 Shewanella bent...
YP_316569     81 AEQTETLAEaaarlglVLAHVKPHGALYNDAAaDAAVAGAVVEGVARvdrrLAVVGLag--sQLVSAALaaGLAALNEAF 158 Thiobacillus de...
ZP_01914670   81 KQQMEFFENiaaklgcTSGHFKPHGQLYNDAAfQTAEAELLIDLAQAfp-hLKLLALag--sPLVAWARsaGIEVVEEAF 157 Limnobacter sp....
Feature 1          #       #  #                                           #                 
YP_003585324 161 ADRNYEVDYSLVSRSKTNAVIeDQEAVFKHVLSMFQdkKIITKSGQILPcNASTFCLHSDTKnSVEILQFLHERF 235 Zunongwangia profund...
ZP_01891643  162 IDRGYTSDLKLKPRSEAGALItSPEMAWEQLRGFILdqKVNTTEGFKTI-MAETYCIHSDHKgSIAMLTFVKKKL 235 unidentified eubacte...
ABO21879     166 ADRGYLADGRLAPRSQPGALIeDAQKVLEQVSSIVEeqKVTAVTGESVScHATSLCLHGDTPkALEFARAIRASL 240 Shewanella loihica PV-4
ABL98233     162 ADRRYEADATLVSRQQPGAVIhNQAEALAQVQALMSg-SLTSIDGARLRlRADTLCLHGDNPeALQFARRIRALL 235 Shewanella amazonens...
YP_605267    164 ADRGYAPDGSLWPRSQAGALL-PHDEAVRQGVRLALtgTVTAVTGEPVRvPARTLCLHGDGAeAAELARDLRQAL 237 Deinococcus geotherm...
YP_001547141 161 IDRAYEIDGCLRSRSLAGAVHhEPNVALQQALALAKgmPFPSYTKLPIRlTVQSLCLHSDTPqALAFAQAVRTAL 235 Herpetosiphon aurant...
ACA84309     169 ADRAYLNDGSLAPRDREGAVIhDRQTALTQVKQFIAqqPITSLDGQPLTvKADTLCLHGDNEhALEFARSIYQII 243 Shewanella woodyi AT...
EDP99600     168 ADRRYLANASLAPRQMQGAVIeEDAQAMEQVEQLLAnkPLTTLDGALLRlRADSICIHGDNEhALSLAKLISARL 242 Shewanella benthica ...
YP_316569    159 ADRRYYASGRLVSRKTLGAVIaDPDAAAAQALALATg-GPLDAEGGAVTiTAETLCVHSDTAdAFKIARAIHRAL 232 Thiobacillus denitri...
ZP_01914670  158 PDRAYLSTGALAPRSQTGAVLhDPIQVKTQAELIVRggPLQCLDGSSLViIAQTLCVHGDNAqALDNAKAVRAAL 232 Limnobacter sp. MED105

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