2I5I,2E67


Conserved Protein Domain Family
YdjC_like

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cd10788: YdjC_like 
Click on image for an interactive view with Cn3D
YdjC-family proteins
YdjC-family proteins are widely distributed, from human to bacteria. It is represented by an uncharacterised protein YdjC (also known as ChbG), encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. This subfamily also includes hopanoid biosynthesis associated proteins HpnK and many uncharacterized YdjC homologs. Although the exact molecular function of the YdjC-family proteins remains unclear, it has been suggested that they play a role in the cleavage of cellobiosephosphate.
Statistics
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PSSM-Id: 212100
Aligned: 16 rows
Threshold Bit Score: 187.226
Created: 17-Nov-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:putative active site [active site]
Evidence:
  • Structure:2E67; Thermus thermophilus YdjC-family protein TTHB029 binds Mg2+ in the active site
  • Comment:This site has a highly negative surface charge.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             ## #                                                          # #          
2I5I_A         7 LIINADDFGYTPAVTQGIIEAHkrgvVTSTTALP------TSPYFLEAXesar------isapTLAIGVHLTLTLnqakp 74  Enterococcus fa...
Q0BPF4         4 IIVSADDFGLTSTVNEAVLDAHrngiLSTCSLMV------AAPAAAEAVamar-------atpSLRVGLHLVLVEgdavl 70  Granulibacter b...
Q7NYW4         5 LTLCADDFAQSGSISAGILQLVdagrLSATSVLC------QSPLWPELAgeik------aradRVDVGLHFNLTHpfdap 72  Chromobacterium...
YP_591660      3 VILHADDLGISSVVNESVFCLLdegrLTSASILA------NGPEFREAArlsk-------ffpHCSFGMHLNLTEfapll 69  Acidobacteria b...
YP_587980      4 VIINADDFGYDDDTFQATVACFdaglLTSATILA------GSPATAHACqyar------dnhsRFSFGLHFNIVEgrrp- 70  Ralstonia metal...
EEF92497       3 IMVRADDLGYIRGVNYGIYDTVkkgvIKNIGFMV------NMPDSVEGYelv--------kdlDVCLGQHTNVCIgtpis 68  Catenibacterium...
2E67_A        15 LILHHDDLGLTHAQNGAYQALG----LPTGSVMV------PGAWASGVK--------------GEDLGVHLVLTSewpap 70  Thermus thermop...
YP_003074598  32 FHFIADDFGRDEATNQAMIHCHqngiLSGVALMM------GQSASAAAVsmak-------enpHLDIGWHFHVVDsqplt 98  Teredinibacter ...
YP_845091      2 LQVNADDLGRTEKITDRIMACHrhgrIHSASLMA------FMNDSERAAala--------rehCLPLGLHLNFTQeltg- 66  Syntrophobacter...
ZP_07720876   79 LLITADDIGIVQEIDEGAKMALynkwINSVAILVngktesNLTELYEFLknncskssdiplidTTHLGLHFTMTSgepva 158 Algoriphagus sp...
Feature 1                                                                    # # #               
2I5I_A        75 i-lprexvPSLVDEAGYFwhqsi-------feekvNLEEVYNEWDAQIISFXKSg-rRPDHIDSHHNVHgk-nKKLLGVA 144 Enterococcus fa...
Q0BPF4        71 ---phariPALVDQQGRFgsdqvrrg-ftyffspsARRQLAEEIDAQFAAFRATg-lTLDHANAHKHMHl--hPTVGKLL 143 Granulibacter b...
Q7NYW4        73 ---vkplsHWLMKSQLRQl----------------SQAALRDEALAQIDRFAEHygrLPDFVDGHQHVHa--lPVIRDAL 131 Chromobacterium...
YP_591660     70 ---psaglAPFLSSDGSFqrkaip-----lrldgqVQRAVVKEWRAQIACLRNAg-vTISHIDSHHHIHt--rLALLPCL 138 Acidobacteria b...
YP_587980     71 ----hgasSTLCRKDGSLfppkiqra--ramagliDAADIRREFRLQLDELRDHg-vNVSHVDGHGHLHk--yPAVMRVL 141 Ralstonia metal...
EEF92497      69 ---dpkliPSLVDENGQFkssrtyr---qskedfvVLEEAIIEIEAQYERFKEIthqEPSYFEAHAVASdnllKGIEIVA 142 Catenibacterium...
2E67_A        71 rmrpltegESLRDEAGYFpeslea------lwrkaRAEEVERELKAQIQAAAKLf--SPTHLDAHQGAVl--rPDLAEVY 140 Thermus thermop...
YP_003074598  99 qpqwpwrtPAQAGFAIGFss--------------aARALVRREIAAQWQAFKASg-lHCAFINAHHHMLi--hPFIRRAL 161 Teredinibacter ...
YP_845091     67 ----rtvsGKLRGQHQRVaaylkarkasqilfnpfLCKAFDYVFRAQWDEFSRLlgkAPARIDGHHHMH----LCMNMLL 138 Syntrophobacter...
ZP_07720876  159 ---npadvGLLLDDKGCFkkftkfn---kdyeadqYVHQIILEFQAQYDKFKSVfkrEPDHLTSHHDVLtf-nRPLFHFM 231 Algoriphagus sp...
Feature 1                                                                                        
2I5I_A       145 LALARKy------qLPLRNasrsietk-----------------------------------dylelyqDVRTPDEXlyq 183 Enterococcus fa...
Q0BPF4       144 CEIGRDyg-----lRAIRIpaeppaimaacgek-----------------------tglsdtllyrwtgMLRAQARKagl 195 Granulibacter b...
Q7NYW4       132 FDAIRRrwqq-dapPYLRSpdklghpgdnrlkalvlr--------------svctnfdeqarergfstsPWFGGMYSls- 195 Chromobacterium...
YP_591660    139 LEVCAEek-----iDRVRLrhtftgnealsrw------------------------ridnllynwtlrqSFTCTDEFgpl 189 Acidobacteria b...
YP_587980    142 RDEMLRag-----iERVRPpqncyflknh------------------------------mrgamnvmllRHFNGLRSpdf 186 Ralstonia metal...
EEF92497     143 KRHNLKfndisfdgTPVDLag-----------------------------------------------eKLYMHMESmke 175 Catenibacterium...
2E67_A       141 LRLAEAy------rLVPLVpesleglgvppp---------------------------flpelerllyeTPFPQVRFldp 187 Thermus thermop...
YP_003074598 162 LDHVRAef-----sGWLRWgqpkffsapnrgy------------------------ivldrllqrpqasAMPCQISQslw 212 Teredinibacter ...
YP_845091    139 HNGIPEg-------LNVRRnftfrrgeknlinr----------------------yyrhlvdtwlskkyKITDAFYSiap 189 Syntrophobacter...
ZP_07720876  232 NEWSDKr------nIPIRNhkflpsgkrfwydtlvlrnvdlpsisrmndwkndfgtkaygpehtfvahyGPLPPLAVvdy 305 Algoriphagus sp...
Feature 1                                                #                 #          
2I5I_A       184 fyd---------kaistETILQLLDXvvc-segEVFEINCHPAfidtilqnqsgyCXPRIREVEILTSQ 242 Enterococcus faecalis V583
Q0BPF4       196 svndhvfglrwsghmtsDKLLRLSRHlp----sGVTEIYTHPAsrpdatlqalmpEYDQTGEYAALIDP 260 Granulibacter bethesdensis...
Q7NYW4       196 ---------------pqADFAGLMQAwla-rapDRALIMCHPGlptnd--asdpiAASRGREFDFLSGS 246 Chromobacterium violaceum
YP_591660    190 l-------------ayvKGPHRLPES-------CTAELMVHPG------------HENYSQETSALTYC 226 Acidobacteria bacterium El...
YP_587980    187 yvg--------adtrqqGWALRLPAMlp----eGVTEMSVHPGf----------aEPWRREEGEPLMHP 233 Ralstonia metallidurans CH34
EEF92497     176 ---------------gyDPFKSFKEMvenahddGCDLLVCHPGyldaqilrtsslTLDRTKEAEMLCSE 229 Catenibacterium mitsuokai ...
2E67_A       188 ygl--------ppeerlGFYLDLAHLp-----pGLYYLVHHSAlptpeg-ralpdWPTREADYFALSHP 242 Thermus thermophilus HB8
YP_003074598 213 gidrtf---kmqsdevsGQIQHLIDCge----tGLHEFMFHPRhsn-------dmDTQCLLELAKILPR 267 Teredinibacter turnerae T7902
YP_845091    190 --------------iewGRLNELILLsk----nSHVEVMVHPGvdaef--yfltsDPGRAFALGRFLPK 238 Syntrophobacter fumaroxida...
ZP_07720876  306 nkqvr-----kkkkilkEGILDFLLSk-----dQVREIVIHLIkse------nrrQRDLIKEHQSLLDL 358 Algoriphagus sp. PR1

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