1XW8,2XU2,1V6T,2DFA


Conserved Protein Domain Family
LamB_YcsF_like

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cd10787: LamB_YcsF_like 
Click on image for an interactive view with Cn3D
LamB/YcsF family of lactam utilization protein
The LamB/YbgL family includes the Aspergillus nidulans protein LamB, and its homologs from all three kingdoms of life. The lamb gene locates at the lam locus of Aspergillus nidulans, consisting of two divergently transcribed genes, lamA and lamB, needed for the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression. Although the exact molecular function of LamB is unknown, it might be required for conversion of exogenous 2-pyrrolidinone to endogenous GABA
Statistics
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PSSM-Id: 212099
Aligned: 169 rows
Threshold Bit Score: 243.494
Created: 19-Nov-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative active
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:putative active site [active site]
Evidence:
  • Structure:2XU2; Pseudomonas Aeruginosa hypothetical protein Pa4511 binds citric acid, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #                                                     #          #         
1XW8_A         3 IDLNADLGEGc-----ASDAELLTLVSSANIACGFHAGDAQIXQACVREAIKNGVAIGAHPSFPDRENFGRSAXqlpPET 77  Escherichia coli
2XU2_A         9 ILLNCDMGESfgawrmGDDVHSMPLVDQANLACGFHAGDPLTMRRAVELAVRHGVSIGAHPAYPDLSGFGRRSLacsAEE 88  Pseudomonas aer...
1V6T_A         3 VDLNSDLGESfgryklGLDEEVMKYITSANVACGWHAGDPLVMRKTVRLAKENDVQVGAHPGYPDLMGFGRRYMkltPEE 82  Pyrococcus hori...
YP_004052592   4 IDINCDLGESfgqfimGNDDSVFPYISSCNIACGFHGGDPLHMENTIKKALNHDVQIGAHPSYPDLAGFGRRKIilsTDE 83  Flexibacter tra...
B2A1I6         4 IDLNCDMGESfghykiGCDEEVINYISSANIACGFHAGDPQVMDYTVKLARDNKVGVGAHPGFNDLQGFGRRKIhmtGEE 83  Natranaerobius ...
EAX48246       4 IDLNCDMGESfgvyklGYDEEAMPYVTSINVACGFHASDPINMLKTVRLAKKYDVAVGAHPSFPDLVGFGRRVMaasIEE 83  Thermosinus car...
ADR18296       3 IDLNCDLGESfgaykiGNDEEVIKFVDRVNIACGFHAGDPIVMDKTVSLAKDYNVKVGAHPSYRDFVGFGRRFLdasPKE 82  Calditerrivibri...
YP_065108      1 MLLNCDMGESfgnysiSQDDKIMPHVDMANIACGMHASDPEVMNHTVTLAKTYGVRIGAHPGYPDLQGFGRRNMalsPSE 80  Desulfotalea ps...
Q9KLG8         6 IQLNCDMGESfgvwtmGADEEVMPWIDMANIACGFHASDPHVMSRTIDLALEHEVMIGAHPSYPDLQGFGRRSLamnEQE 85  Vibrio cholerae
EGU60183       6 LKLNCDMGESfgswkmGLDEEVMPWVDMANIACGFHASDPNVMSTTLKLAKQYRVSVGAHPGYPDLNGFGRRSIpmsQDE 85  Vibrio nigripul...
Feature 1                                  # ##   #                                              
1XW8_A        78 VYAQTLYQIGALATiaraqggVXRHVKPHGXLYNQAAkEAQLADAIARAVYAcdpaLILVGLag---sELIRAGKqyGLT 154 Escherichia coli
2XU2_A        89 VHAMVLYQIGALDAfcrslgtQVAYVKPHGALYNDLVgDDELLRAVLDACAAyrkgLPLMVLaladngRELELADeaDVP 168 Pseudomonas aer...
1V6T_A        83 ARNYILYQVGALYAfakaeglELQHVKPHGALYNAMVkEEDLARAVIEGILDfdkdLILVTLsn---sRVADIAEemGLK 159 Pyrococcus hori...
YP_004052592  84 LKAAVKYQIAALQGmvkslggELKYVKAHGALYNTIAhDMTEAEVFLTAVNEinpnLAIMGLag---sPFEEFTRkfGFN 160 Flexibacter tra...
B2A1I6        84 IVNELIYQIGAIRSfceangvGLSHVKPHGALNNMASvDENLARAVAKAIKLtdpnLIYIALag---sKMEQIGReeGLK 160 Natranaerobius ...
EAX48246      84 IKADVMYQIGALWAfckaegvKLQHVKPHGALYNVAEkDVTTAVAIAEAIKAvdpdLYMVCLgn---sAMVEAAKkvGVK 160 Thermosinus car...
ADR18296      83 IENDIIYQIGALHAfclkhsiQLDHVKPHGALYNRAAvDFDTAMAVARGIKAfdrnLKMVVLcn---sEMVRAAEmaGLT 159 Calditerrivibri...
YP_065108     81 CKNTMLYQVGALSAfcrihevSLDYIKPHGALYNTMMrDEAILRAALQVAAKmeckLMILATar--wqEHKKLATeyGTE 158 Desulfotalea ps...
Q9KLG8        86 VSEIILYQVGALKAlceskngQLSYVKPHGALYNDMMsDPSIFRAVVDAVSCf--nLPLMVLasannqDYLDIADrfDVP 163 Vibrio cholerae
EGU60183      86 IVHNVVYQVGAIQSlanlnsvKVEYIKPHGALYNDMMkSEEVFVGILAAAENf--sLPVMILagtdnsRYLDLADqfNVP 163 Vibrio nigripul...
Feature 1             #  #       #  #                                           #                
1XW8_A       155 TREEVFADRGYQAdGSLVPRsqsgalienEEQALAQTLEXVQhgrvksitgewatvAAQTVCLHGDGehALAFARRLRSA 234 Escherichia coli
2XU2_A       169 LLFEAFADRAYLPdGRLAPRrlggavhhdPQRIIEQALAIARgeafpdydgnplrlTADSLCVHGDNpqSLAVLRRLRAA 248 Pseudomonas aer...
1V6T_A       160 VAHEVFADRAYNPdGTLVPRgrpgaviedKEEIAERVISMVKdggiraingewvdlKVDTICVHGDNpkAVEITSYIRKV 239 Pyrococcus hori...
YP_004052592 161 FIKEGFLDRKYQDdGSLMPRkeegavlqsVQESLNQFKMISEnekvgtasgklipmKVDSLCIHGDNplAEEILRKIKHS 240 Flexibacter tra...
B2A1I6       161 VAKEAFADRQYNPdGTLVSRqeagavlhdKETIIERVVQMASegvvtakdgtklniNPDTICVHGDNpeAVELAASIRHM 240 Natranaerobius ...
EAX48246     161 YVEEAFADRAYTSqGTLVPRkqagavihdVNAVADRVLSMVKnktvtaidgtvvpiSAQTICVHGDTpgAVEMIKAIRAK 240 Thermosinus car...
ADR18296     160 YLKEAFADRHYDDnGRLVSRkvngaviddLNLILSRVKRMITdgmvesitgkviklNPDTICVHGDNekALEIAKNLNLL 239 Calditerrivibri...
YP_065108    159 IILEGFVDRGYEDdGSLINRnkeg-aliaKAEMIQRVKNCCLgrailsragntlnfPIDSLCVHGDGd-GAHLIKEFKTI 236 Desulfotalea ps...
Q9KLG8       164 LLFEAFADRTYLAnGKLTPRsqpnavlssEEAILNQVRQIARygkvtssdgfvipiEADTLCVHGDNpnAVSLIARIRAA 243 Vibrio cholerae
EGU60183     164 LLFEAFADRAYLDnGLLVPRshpdavyhkEDDIYHQVMQLARygsitsinsskiqiEADTVCVHGDNpeSVAMVQRISQS 243 Vibrio nigripul...
Feature 1         
1XW8_A       235 F 235 Escherichia coli
2XU2_A       249 L 249 Pseudomonas aeruginosa PAO1
1V6T_A       240 L 240 Pyrococcus horikoshii OT3
YP_004052592 241 N 241 Flexibacter tractuosus DSM 4126
B2A1I6       241 L 241 Natranaerobius thermophilus JW/NM-WN-LF
EAX48246     241 L 241 Thermosinus carboxydivorans Nor1
ADR18296     240 L 240 Calditerrivibrio nitroreducens DSM 19672
YP_065108    237 I 237 Desulfotalea psychrophila LSv54
Q9KLG8       244 L 244 Vibrio cholerae
EGU60183     244 L 244 Vibrio nigripulchritudo ATCC 27043

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