3KMP


Conserved Protein Domain Family
MH1_SMAD_1_5_9

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cd10490: MH1_SMAD_1_5_9 
Click on image for an interactive view with Cn3D
N-terminal Mad Homology 1 (MH1) domain in SMAD1, SMAD5 and SMAD9 (also known as SMAD8)
The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. MH1 binds to the DNA major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 domain is found in SMAD1, SMAD5 and SMAD9, all closely related receptor regulated SMADs (R-SMADs). SMAD1 plays an essential role in bone development and postnatal bone formation through activation by bone morphogenetic protein (BMP) type 1 receptor kinase. SMAD5 is involved in bone morphogenetic proteins (BMP) signal modulation and may also play a role in the pathway involving inhibition of hematopoietic progenitor cells by TGF-beta. SMAD9 mediates the differentiation of mesenchymal stem cells (MSCs) into tendon-like cells by inhibiting the osteogenic pathway.
Statistics
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PSSM-Id: 199814
Aligned: 18 rows
Threshold Bit Score: 242.023
Created: 29-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA bindingZn binding site
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:based on mouse SMAD1-MH1 and other SMAD-MH1 domains with structure
  • Structure:3KMP: Mus musculus SMAD1-MH1 binds DNA (a palindromic SMAD binding element, GTCTAGAC), contacts at 4.0A
  • Comment: MH1 binds to the major groove via a beta hairpin structure
  • Citation:PMID 9741623

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                               #   #                                  ##  #####  #      
3KMP_A         1 FTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSCPGQP-SNCVTIPRSLDGRLQVSHRKGLPHVI 79  house mouse
NP_001071815   9 FTSPAVKRLLGWKQGDEEEKWAEKAVDSLVKKLKKKKGSMEELERALSCPGQP-SKCVTIPRSLDGRLQVSHRKGLPHVI 87  Ciona intestinalis
XP_002112850   7 FTSPAVKRLLGWRQGDEEEKWAEKAIDSLVKKLKRKKGALEELEKALSCPGQP-TNCVTIPRSLDGRLQVSHRKGLPHVI 85  Trichoplax adha...
ACU12852       9 FTSPVVKRLLGWKQGDEEEKWAEKAVDSLVKKLKKKKGAMEELERALSRPGEL-SKCVTIPRSLDGRLQVSHRKGLPHVI 87  common urchin
AAV80239      14 FGYPVLCGSLGWKQGDEEGKWAQKAIETLIKKLKKRKGVLERLQYALLHPNEP-SECVTIPRSLDGRIQVSHRKGFPHVI 92  Schistosoma man...
ABQ23403       9 FTSPAVKRLLGWKQGDEEEKWAEKAVDSLVKKLKKKKGAMEELEKALSCPGQP-SKCVTIPRSLDGRLQVSHRKGLPHVI 87  Branchiostoma b...
AAL87851      10 FTSPAVKRLLGWKQGDEEEKWAEKAIDSLVKKLKKRKGALEELEKALSNPSSGnSKCVTIPRSLDGRLQVSHRKGLPHVI 89  Hydra vulgaris
XP_003383361   4 FSSPAVKRLLGWKQGDEDDKWAEKAIDSLVKKLKKQKGSLEELERALSQANPQ-THCVTIARSLDGRLQVSHRKGLPHVI 82  Amphimedon quee...
EFX70037      10 FTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKKKGAIEELEKALSCPGQP-SKCVTIPRSLDGRLQVSHRKGLPHVI 88  common water flea
ADI48174      11 FTSPAVKRLLGWKQGDEEEKWAEKAVDSLVKKLKKKKGALEDLEKALSCAGQV-TKCVTIPRSLDGRLQVSHRKGLPHVI 89  Crepidula forni...
Feature 1                    #                                 
3KMP_A        80 YCRVWRWPDLQSHHELKPLECCEFPFg-SKQKEVCINPYHYKRVES 124 house mouse
NP_001071815  88 YCRVWRWPDLQSHHELKPLEICSYPFd-AKQKDVCINPYHYKRVES 132 Ciona intestinalis
XP_002112850  86 YCRVWRWPDLQSHHELKPLPMCEYAFh-YKLKDVCVNPYHYQRVET 130 Trichoplax adhaerens
ACU12852      88 YCRVWRWPDLQSHHELKALDCCDYAFg-KKQKEVCINPYHYKRVES 132 common urchin
AAV80239      93 YCRVWRWPDLQSHHELRPVENCKLPFs-SKETEVCINPYHYTRVDY 137 Schistosoma mansoni
ABQ23403      88 YCRVWRWPDLQSHHELKPLEHCNYPFgaKDTKEVCINPYHYKRVES 133 Branchiostoma belcheri tsingtauense
AAL87851      90 YCRVWRWPDLQSHHELKPLDCCEFAFg-LNKKEVCINPYHYRRVET 134 Hydra vulgaris
XP_003383361  83 YCRVWRWPDLQNHHELKPLDHCEFAYs-RNKGEVCINPYHYKRVET 127 Amphimedon queenslandica
EFX70037      89 YCRVWRWPDLQSHHELKPLEICEYPFs-SKQKEVCINPYHYKRVES 133 common water flea
ADI48174      90 YCRVWRWPDLQSHHELKPLECCEYPFs-AKQKEVCINPYHYKRVES 134 Crepidula fornicata

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