1MHD,1OZJ,3KMP


Conserved Protein Domain Family
MH1_R-SMAD

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cd10488: MH1_R-SMAD 
Click on image for an interactive view with Cn3D
N-terminal Mad Homology 1 (MH1) domain of receptor regulated SMADs
The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. It binds to the major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 domain is found in all receptor regulated SMADs (R-SMADs) including SMAD1, SMAD2, SMAD3, SMAD5 and SMAD9. SMAD1 plays an essential role in bone development and postnatal bone formation through activation by bone morphogenetic protein (BMP) type 1 receptor kinase. SMAD2 regulates multiple cellular processes, such as cell proliferation, apoptosis and differentiation, while SMAD3 modulates signals of activin and TGF-beta. SMAD4, a common mediator SMAD (co-SMAD) binds R-SMADs, forming an oligomeric complex that binds to DNA and serves as a transcription factor. SMAD5 is involved in bone morphogenetic proteins (BMP) signal modulation, possibly playing a role in the pathway involving inhibition of hematopoietic progenitor cells by TGF-beta. SMAD9 (also known as SMAD8) can mediate the differentiation of mesenchymal stem cells (MSCs) into tendon-like cells by inhibiting the osteogenic pathway
Statistics
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PSSM-Id: 199812
Aligned: 5 rows
Threshold Bit Score: 203.19
Created: 29-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA bindingZn binding site
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:based on human SMAD3-MH1, mouse SMAD1-MH1, and mouse SMAD4-MH1, domains with structure
  • Comment: MH1 binds to the major groove via a beta hairpin structure
  • Structure:1MHD: human SMAD3-MH1 binds DNA (a palindromic SMAD binding element, GTCTAGAC), contacts at 4.0A
  • Citation:PMID 9741623
  • Structure:3KMP: Mus musculus SMAD1-MH1 binds DNA (a palindromic SMAD binding element, GTCTAGAC), contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                #   #  #                               ##  #####  #     
1MHD_A        10 PIVKRLLGWKkge-qngQEEKWCEKAVKSLVKKLKKTg-QLDELEKAITtQNVN-TKCITIPRSLDGRLQVSHRKGLPHV 86  human
1OZJ_A        10 PIVKRLLGWKkge-qngQEEKWCEKAVKSLVKKLKKTg-QLDELEKAITtQNVN-TKCITIPRSLDGRLQVSHRKGLPHV 86  human
3KMP_A         4 PAVKRLLGWKqg----dEEEKWAEKAVDALVKKLKKKkgAMEELEKALScPGQP-SNCVTIPRSLDGRLQVSHRKGLPHV 78  house mouse
XP_003384489  39 HNVTQLLKYRkeg-egeEDHKKAEKEIKSLVKKLKKKe-NLHELERALSsGGDIpTRCVTLPRQLDGKDGASAQSRLPHV 116 Amphimedon quee...
AAF46330       7 QVVKRLLALKkgnednsVEGKWSEKAVKNLVKKIKKNs-QLEELERAIStQNCQ-TRCVTVPRSKPAPAGEHLRKGLPHV 84  fruit fly
Feature 1                     #                                 
1MHD_A        87 IYCRLWRWPDLHSHHELRAMELCEFAFn-mKKDEVCVNPYHYQRVET 132 human
1OZJ_A        87 IYCRLWRWPDLHSHHELRAMELCEFAFn-mKKDEVCVNPYHYQRVET 132 human
3KMP_A        79 IYCRVWRWPDLQSHHELKPLECCEFPFg-sKQKEVCINPYHYKRVES 124 house mouse
XP_003384489 117 VYCRIWRWPDLQSHHELKPADVCQYSYynrKSEEVCINPYHYIRIVA 163 Amphimedon queenslandica
AAF46330      85 IYCRLWRWPDLQSQNELKPLDHCEYAFh-lRKEEICINPYHYKKIEL 130 fruit fly

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