1KGY,2QBX,1SHW


Conserved Protein Domain Family
EphR_LBD_B2

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cd10477: EphR_LBD_B2 
Click on image for an interactive view with Cn3D
Ligand Binding Domain of Ephrin type-B Receptor 2
Ephrin receptors (EphRs) comprise the largest subfamily of receptor tyrosine kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. EphB2 plays a role in cell positioning in the gastrointestinal tract by being expressed in proliferating progenitor cells. It also has been implicated in colorectal cancer. A loss of EphB2, as well as EphA4, also precedes memory decline in a murine model of Alzheimers disease. EphRs contain a ligand binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyrosine kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling).
Statistics
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PSSM-Id: 198445
Aligned: 6 rows
Threshold Bit Score: 384.025
Created: 9-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ephrin binding
Conserved site includes 32 residues -Click on image for an interactive view with Cn3D
Feature 1:ephrin binding site [polypeptide binding site]
Evidence:
  • Structure:1KGY, human EphB2-ephrinB2 complex, contacts 4A
  • Structure:1SHW, mouse EphB2-ephrinA5 complex, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  ### #                #### #   # # #  #                                #
1KGY_A          1 AEETLMDSTTATAELGWMVHPP-----SGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFS 75   house mouse
P28693         20 VEETLMDSTTATAELGWMVHPP-----SGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKYIRRRGAHRIHVEMKFS 94   chicken
NP_001028266   17 IEEILMDSTTATAELGWTVYPVsgtsdSSWEEVSGYDENMNTIRTYQVCNVFDANQNNWVRTKYIRRRGAQRIHVEMKFS 96   zebrafish
XP_003229765    2 LAETLMDSTTATAELGWMVHPP-----SGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKYIRRRGAHRIHVEMKFS 76   green anole
2QBX_A         31 AEETLMDSTTATAELGWMVHPP-----SGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFS 105  human
1SHW_B          1 VEETLMDSTTATAELGWMVHPP-----SGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFS 75   house mouse
Feature 1         ##   # #                                             # ######## ##              
1KGY_A         76 VRDCSSIPSVPGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRNG 155  house mouse
P28693         95 VRDCSSIPNVPGSCKETFNLYYYESDFDSATKTFPNWMENPWMKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSKNG 174  chicken
NP_001028266   97 VRDCSSIPRVPGSCKETFNLYYYESDSDTATKTFPPWMENPWIKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRNG 176  zebrafish
XP_003229765   77 VRDCSSIPNVPGSCKETFNLYYYESDHDAATKSFPTWMENPWAKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSKNG 156  green anole
2QBX_A        106 VRDCSSIPSVPGSCKETFNLYYYEADFDSATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRSG 185  human
1SHW_B         76 VRDCSSIPSVPGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRNG 155  house mouse
Feature 1                   # # #        
1KGY_A        156 FYLAFQDYGGCMSLIAVRVFYRK 178  house mouse
P28693        175 FYLAFQDYGGCMSLIAVRVFYRK 197  chicken
NP_001028266  177 FYLAFQDYGGCMSLIAVRVFYRK 199  zebrafish
XP_003229765  157 FYLAFQDYGGCMSLIAVRVFYRK 179  green anole
2QBX_A        186 FYLAFQDYGGCMSLIAVRVFYRK 208  human
1SHW_B        156 FYLAFQDYGGCMSLIAVRVFYRK 178  house mouse

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