Conserved Protein Domain Family
PUB_WLM

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cd10463: PUB_WLM 
PNGase/UBA or UBX (PUB) domain of the Wss1p-like metalloprotease (WLM) family
The PUB domain functions as a p97 (also known as valosin-containing protein or VCP) adaptor by interacting with the D1 and/or D2 ATPase domains. The type II AAA+ ATPase p97 is involved in a variety of cellular processes such as the deglycosylation of ERAD substrates, membrane fusion, transcription factor activation and cell cycle regulation through differential binding to specific adaptor proteins. WLM domains are found mostly in plant proteins, belonging to the Zincin-like superfamily of Zn-dependent peptidases that are linked to the ubiquitin signaling pathway through its fusion with the ubiquitin-binding PUB, ubiquitin-like, and Little Finger domains. More specifically, genetic evidence implicates the WLM family in de-SUMOylation.
Statistics
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PSSM-Id: 198421
Aligned: 10 rows
Threshold Bit Score: 111.71
Created: 22-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • Comment:Predicted interaction of WLM to its adaptor protein based on the itneraction of similar proteins.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                               #  ##  #           ## ###  # #   #                       
Q6ZK12       566 AIEMLRSQat----ptEATSALQTLFKIIKNVIEH---PHDIKYRRLRKsNPQFQRSVAnyKAAMEVLELIGFCEDvvsd 638 Oryza sativa Ja...
CBJ49209     592 QQAADRVAgha--draRAVQCLDVLAAVLRNIMEH---PEEAKFRKVRRsNGKFKASVGavAGGVDLLLAAGFEERg--- 663 Ectocarpus sili...
XP_002528954 487 ELQRIQDPvtvv-xxxXXXXAFQTLFKIIRNVIEH---PNEMKFKRLRKaNPIIQKNVAnhRAAMEILLVAGFSEDvvfd 562 castor bean
XP_003058871 519 ACAAMSSStsv---vsEVVVALDTIALILGNALSApkgPSGDKFRCIKQnNPAFVRRAGrlRGSTELLRAAGFAPSgad- 594 Micromonas pusi...
ABH03545     120 AIKALRNEvs----pgQATTVLQMLLKIVRNIIEQ---PNEMKFKRLRKgNPAIKRNILnfPAAVEILSVVGFVDEmvse 192 thale cress
EFW45867     551 KLERATAAarqiavsaGAQECLRTLQVYLGNALRY---PKDPKYHRIRAtNQAFQDRVAsvEGGTELLELAGFAREq--- 624 Capsaspora owcz...
ABK25240     697 AIQKLRSQvp----pvEMASVIRTLFTILGNVMNH---PNETKFRRLRKaNPIFQRSIAkyEAALEVLRAVGFSEDnasn 769 Sitka spruce
XP_001753579 560 TLKRQASPs-------ETNATIQVLFTIFRNVIDH---PNEDKYRRLRKgNPTFHNRVAkfTGAVEVLQAVGFTDGgspl 629 Physcomitrella ...
XP_002898152 357 AVRHLQSHys----peTISKAVSLLHKIISNIITH---PADEKFRFIRKdNRIFDRHVArfPECLEFLLALGFEDQs--- 426 Phytophthora in...
XP_002949542 729 PVAAVTAE--------DVASALDTLETMLGNAVHF---PAEDRYRRVRLsNAAFQRRVGrlPGGVELLRVAGFVEEgs-- 795 Volvox carteri ...
Feature 1                                    
Q6ZK12       639 eigraETYLVlkRNDPGLLWLAKASLEV 666 Oryza sativa Japonica Group
CBJ49209     664 ----dDQLELg-RQDPGLIWLAKSTVEA 686 Ectocarpus siliculosus
XP_002528954 563 atgkpETYLVlkRNDPGLLWLVKSSLET 590 castor bean
XP_003058871 595 ---ggELKLT--RDDPALLYVVRSAVCD 617 Micromonas pusilla CCMP1545
ABH03545     193 stgaqEPYLVlkRNDPGLLWIAKSMIEE 220 thale cress
EFW45867     625 -----DAFRLs-AYDPGLIWLIKNVVDE 646 Capsaspora owczarzaki ATCC 30864
ABK25240     770 eigitETCLVlkRNDPGLLWLARSSLEV 797 Sitka spruce
XP_001753579 630 gsggtDCLVLk-RSDPGLLWLARSMLET 656 Physcomitrella patens subsp. patens
XP_002898152 427 -----DKFVLv-RQDPALLWIGRSTLEV 448 Phytophthora infestans T30-4
XP_002949542 796 ---gpDAVLRlrRNDPGLLWLVLSAVRE 820 Volvox carteri f. nagariensis

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