Conserved Protein Domain Family
PUB_UBA_plant

?
cd10461: PUB_UBA_plant 
PNGase/UBA or UBX (PUB) domain of plant Ubiquitin-associated (UBA) domain containing proteins
The PUB domain functions as a p97 (also known as valosin-containing protein or VCP) adaptor by interacting with the D1 and/or D2 ATPase domains. The type II AAA+ ATPase p97 is involved in a variety of cellular processes such as the deglycosylation of ERAD substrates, membrane fusion, transcription factor activation and cell cycle regulation through differential binding to specific adaptor proteins. The UBA domain, along with UBL (ubiquitin-like) domain, has been implicated in proteasomal degradation by associating with substrates destined for degradation as well as with subunits of the proteasome, thus regulating protein turnover. This family contains only plant UBA domain-containing proteins.
Statistics
?
PSSM-Id: 198419
Aligned: 8 rows
Threshold Bit Score: 166.84
Created: 21-Apr-2011
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • Comment:Predicted interaction of UBA domain containing to its adaptor protein based on the itneraction of similar proteins.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                  #  ##  #        ## ###  # #   #                       
XP_001783271 304 LRGLKQAHked------eaKVKKAFQTMLTYIGNVARsPNEDKFRKIRLtNATFQERVGslrGGIEFLQLcGFERDq-dE 376 Physcomitrella ...
XP_003080079 338 LVDIKKAFaed------adAVTTCFNTLLTYLGNIARaPNEEKYRSIRLsNAAFQKRVVavgGEIYLLEF-GFKEIv-dD 409 Ostreococcus tauri
EDP09322     308 LVTLKKAHmagvagssgeeAFKTACGTMLKYLGNIAAnPGEDKFRSIRLaNAAFQSRVGvlpGAIDFLLTcGFEKTd--E 385 Chlamydomonas r...
Q9FKC7       187 LRSLRRNHkde-----dprITRRVFETLLTIVRNVAKkPDEERYRRIRLkNRLFHERVGrykEGIEFMELcGFKRVegsE 261 thale cress
XP_002500308 329 LVDIKKTHges-----nadGVTTCYKTLLLYLGNVVKaPDEEKFRKIRLdNAAYQKRVAg-vGGGAFLEKcGFVNDg--E 400 Micromonas sp. ...
NP_001150837 269 LRTVKKNHrdd------paAVARAYQVLLKIVGNVAKnPGEEKFRRIRLsNPVFKDRVGsvrGGVEFLELcGFRRLsgiG 342 maize
Q6K653       308 LRNLKQQNkdd------daKVKRAFQTLLTYIGNVAKnPDEEKFRKIRLtNATFQERVGnlhGGIEFLQLcGFEKLegnE 381 Oryza sativa Ja...
EFN54376     307 LVDMKKAHpgq------ddALKTCWQTLLKMCGNIYAnPGEDKFRRVRLtNPAIQQRVAaftGAVDFLHLaGFQRDaggE 380 Chlorella varia...
Feature 1                                             
XP_001783271 377 FLTLprek----vdmVLLNTAGSELNSAINNPFFGVL 409 Physcomitrella patens subsp. patens
XP_003080079 410 AGEKrlvlpqesvdqVLLKTAGEELHGAINNPFFGML 446 Ostreococcus tauri
EDP09322     386 ALVMaadk----vnmELLNGAGAALNEAITNPFFGVL 418 Chlamydomonas reinhardtii
Q9FKC7       262 FLSLskrd----sdiNRLRDAAFLLNSASANPFFGLL 294 thale cress
XP_002500308 401 ALVLprsd----vdaLLFNLAGAEINGALTNPFFGVL 433 Micromonas sp. RCC299
NP_001150837 343 YLVMprdk----vdvALLTAAGVEIASALENPYFGLL 375 maize
Q6K653       382 FLFLardk----vdkAVLNTAGAELNSAITNPFFGVL 414 Oryza sativa Japonica Group
EFN54376     381 NLEMpadk----vdrAVLEVAGEQLNSALNNPFFGIL 413 Chlorella variabilis

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap